CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.
☆44Aug 28, 2026Updated this week
Alternatives and similar repositories for CICERO
Users that are interested in CICERO are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Search for activating regulatory variants in the tumor genome☆15Apr 11, 2025Updated last year
- RNA Fusion Detection and Quantification☆18Oct 31, 2018Updated 7 years ago
- ALLSorts is a B-Cell Acute Lymphoblastic Leukemia (B-ALL) subtype classifier. From gene expression counts to over 18 subtypes.☆18Jul 30, 2025Updated last year
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Jun 11, 2026Updated 2 months ago
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Public repository for the biodata resource inventory performed in 2022.☆11Nov 25, 2025Updated 9 months ago
- Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.☆50Updated this week
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆12May 12, 2025Updated last year
- Demonstrating best practices for bioinformatics command line tools☆24Jun 2, 2026Updated 3 months ago
- Python library for simple and complex indels.☆13Jan 22, 2024Updated 2 years ago
- chimeraviz is an R package that automates the creation of chimeric RNA visualizations.☆40Aug 18, 2026Updated 2 weeks ago
- Merging, Annotation, Validation, and Illustration of Structural variants☆76Aug 22, 2023Updated 3 years ago
- ☆20May 31, 2024Updated 2 years ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆23Nov 16, 2020Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Fast and accurate gene fusion detection from RNA-Seq data☆274Sep 21, 2025Updated 11 months ago
- Detecting intron retention from RNA-Seq experiments☆54Jul 17, 2024Updated 2 years ago
- Somatic indel discovery tool for tumor RNA-Seq data.☆24Nov 21, 2025Updated 9 months ago
- Gene Fusion Visualiser☆53Jan 15, 2023Updated 3 years ago
- FusionInspector code☆63May 21, 2026Updated 3 months ago
- Rust crates for working with Workflow Description Language (WDL) documents.☆62Sep 23, 2025Updated 11 months ago
- Create Bloom filters for a given reference and then use it to categorize sequences☆78Nov 26, 2024Updated last year
- km : a software for RNA-seq investigation using k-mer decomposition☆11Apr 8, 2025Updated last year
- ChimPipe: Accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data☆15Jan 22, 2026Updated 7 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆19Dec 9, 2020Updated 5 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆154Apr 16, 2026Updated 4 months ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆19Mar 5, 2019Updated 7 years ago
- Identify major cellular signals in bulk transcriptomes☆11Jun 1, 2022Updated 4 years ago
- ☆24Apr 14, 2022Updated 4 years ago
- Efficient algorithms for designing orthogonal DNA sequence libraries☆13Oct 23, 2024Updated last year
- ☆95Aug 29, 2025Updated last year
- Accompanying analysis code for the FRASER manuscript☆25Aug 27, 2020Updated 6 years ago
- We aim to make it easier for biomedical researchers to access and customize synthetic sequence data for the purpose of sharing and testin…☆11Jul 22, 2019Updated 7 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆92Apr 5, 2021Updated 5 years ago
- Analyses for Manuscript "Sensitive detection of renal cell carcinoma using plasma and urine cell-free DNA methylomes"☆13Aug 4, 2020Updated 6 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Jun 30, 2020Updated 6 years ago
- A script to run HLA typing tools from next generation sequencing data☆12Jan 4, 2023Updated 3 years ago
- ☆10Sep 14, 2023Updated 2 years ago
- Plot CNV data with a genome viewer in R☆16Apr 5, 2017Updated 9 years ago
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL.☆14Nov 29, 2013Updated 12 years ago