stjude / CICEROLinks
CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.
☆41Updated 3 weeks ago
Alternatives and similar repositories for CICERO
Users that are interested in CICERO are comparing it to the libraries listed below
Sorting:
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 8 months ago
- ☆72Updated 2 years ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆78Updated last year
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆53Updated this week
- Gene Fusion Visualiser☆51Updated 2 years ago
- ☆21Updated last week
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆87Updated last week
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆80Updated 4 years ago
- QDNAseq package for Bioconductor☆52Updated last year
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 3 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆37Updated 3 years ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 5 months ago
- Reference genome resource manager☆74Updated last year
- Precision HLA typing from next-generation sequencing data☆73Updated 2 months ago
- Tumor Mutational Burden☆61Updated 2 months ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated last year
- FusionInspector code☆58Updated last month
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- BigWig and BAM utilities☆97Updated last year
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- Workflows for converting between sequence data formats☆39Updated 4 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last year
- SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances☆89Updated 2 years ago
- JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions☆101Updated 4 months ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- Python package to annotate and visualize gene fusions.☆64Updated last year
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆50Updated last week
- The Zavolab Automated RNA-seq Pipeline☆35Updated 2 months ago
- SingleCell Nanopore sequencing data analysis☆61Updated 4 months ago