Alternatives and similar repositories for CanDIGv2

Users that are interested in CanDIGv2 are comparing it to the libraries listed below

• biothings / myvariant.info
  MyVariant.info: A BioThings API for human variant annotations
  ☆98Updated 5 months ago
• charite / jannovar
  Annotation of VCF variants with functional impact and from databases (executable+library)
  ☆64Updated last week
• konradjk / exac_browser
  Browser for ExAC consortium data
  ☆106Updated 4 years ago
• brwnj / bcl2fastq
  NextSeq specific bcl2fastq2 wrapper.
  ☆55Updated 4 years ago
• macarthur-lab / clinvar
  This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…
  ☆131Updated 5 years ago
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆120Updated last year
• Kennedy-Lab-UW / Duplex-Sequencing
  ☆57Updated 5 years ago
• grst / snakemake_nextflow_wdl
  simple comparison of snakemake, nextflow and cromwell/wdl
  ☆50Updated 5 years ago
• SACGF / variantgrid
  VariantGrid public repo
  ☆24Updated this week
• biocommons / uta
  Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…
  ☆71Updated this week
• counsyl / hgvs
  HGVS variant name parsing and generation
  ☆176Updated 2 years ago
• ga4gh / vrs
  Extensible specification for representing and uniquely identifying biological sequence variation
  ☆94Updated this week
• KHP-Informatics / ngseasy
  Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)
  ☆86Updated 8 years ago
• broadinstitute / oncotator
  ☆69Updated 3 years ago
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆61Updated this week
• NCBI-Hackathons / Community_Software_Tools_for_NGS
  ☆63Updated 9 years ago
• WGLab / phenolyzer
  phenotype-based prioritization of candidate genes for human diseases
  ☆65Updated 3 years ago
• schatzlab / appliedgenomics2017
  JHU EN.600.649: Computational Genomics: Applied Comparative Genomics
  ☆59Updated 7 years ago
• igvteam / igv-webapp
  IGV Web App
  ☆127Updated 3 weeks ago
• mutalyzer / mutalyzer2
  HGVS variant nomenclature checker
  ☆98Updated 2 years ago
• genome / analysis-workflows
  Open workflow definitions for genomic analysis from MGI at WUSM.
  ☆104Updated 7 months ago
• Illumina / interop
  C++ Library to parse Illumina InterOp files
  ☆81Updated 2 months ago
• gatk-workflows / broad-prod-wgs-germline-snps-indels
  Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…
  ☆57Updated 5 years ago
• openvar / variantValidator
  Public repository for VariantValidator project
  ☆79Updated 3 weeks ago
• 4dn-dcic / tibanna
  Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…
  ☆71Updated 3 months ago
• rhshah / IMPACT-Pipeline
  Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay
  ☆57Updated 4 years ago
• ohsu-comp-bio / g2p-aggregator
  Associations of genomic features, drugs and diseases
  ☆48Updated 3 years ago
• genome / gms
  The Genome Modeling System installer
  ☆78Updated 10 years ago
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆88Updated 2 months ago
• SciLifeLab / NGI-RNAseq
  Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
  ☆51Updated 7 years ago