ShouWenWang-Lab / cosparLinks
Further development of CoSpar happens here!
☆9Updated 9 months ago
Alternatives and similar repositories for cospar
Users that are interested in cospar are comparing it to the libraries listed below
Sorting:
- Code for scKINETICS (ISMB 2023)☆21Updated last year
- Create cisTarget databases☆52Updated last week
- ☆26Updated last year
- TACCO: Transfer of Annotations to Cells and their COmbinations☆50Updated 11 months ago
- Repository to perform mapping of new datasets to the Human Lung Cell Atlas.☆19Updated 2 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆60Updated last year
- ☆11Updated 5 years ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆118Updated 10 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Tools for analyzing Slide-seq data☆31Updated last year
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 5 years ago
- Bayesian model for RNA velocity estimation of periodic manifolds☆33Updated last year
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆50Updated 11 months ago
- inferring regulatory cellular dynamics☆48Updated last week
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction☆89Updated 2 months ago
- SCENIC+ analyses☆14Updated last year
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆68Updated this week
- ☆24Updated last year
- .h5mu files interface for Seurat☆32Updated last year
- ☆44Updated last week
- ☆54Updated last month
- Metacells - Single-cell RNA Sequencing Analysis☆107Updated 9 months ago
- A module for working with snap files in Python☆36Updated 5 years ago
- ☆59Updated 9 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆52Updated 10 months ago
- Single cell omics biology annotations☆51Updated 2 months ago
- R package for single cell and other data analysis using diffusion maps☆88Updated 7 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆75Updated 3 months ago
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆97Updated 3 months ago