Alternatives and similar repositories for cospar:

Users that are interested in cospar are comparing it to the libraries listed below

• simonwm / tacco
  TACCO: Transfer of Annotations to Cells and their COmbinations
  ☆45Updated 9 months ago
• cole-trapnell-lab / cicero-release
  ☆59Updated 7 months ago
• YosefLab / Cassiopeia
  A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction
  ☆86Updated 2 weeks ago
• JonathanShor / DoubletDetection
  Doublet detection in single-cell RNA-seq data.
  ☆91Updated 2 months ago
• scverse / mudata
  Multimodal Data (.h5mu) implementation for Python
  ☆93Updated last month
• aertslab / create_cisTarget_databases
  Create cisTarget databases
  ☆49Updated 2 months ago
• abelson-lab / scATOMIC
  Pan-Cancer Single Cell Classifier
  ☆68Updated 10 months ago
• Nanostring-Biostats / InSituType
  An R package for performing cell typing in SMI and other single cell data
  ☆34Updated 4 months ago
• morris-lab / Capybara
  Capybara: A computational tool to measure cell identity and fate transitions
  ☆58Updated 2 years ago
• scverse / anndataR
  AnnData interoperability in R
  ☆75Updated last week
• SCCAF / sccaf
  Single-Cell Clustering Assessment Framework
  ☆101Updated last year
• aertslab / pycisTopic
  pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
  ☆68Updated 2 weeks ago
• dpeerlab / scKINETICS
  Code for scKINETICS (ISMB 2023)
  ☆21Updated last year
• MingyuYang-Yale / DBiT-seq
  ☆25Updated 2 months ago
• Novartis / scar
  scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
  ☆52Updated 8 months ago
• BayraktarLab / cell2fate
  Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
  ☆72Updated last month
• JEFworks-Lab / MERINGUE
  characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…
  ☆72Updated 2 years ago
• dcjones / proseg
  Probabilistic cell segmentation for in situ spatial transcriptomics
  ☆69Updated this week
• jfnavarro / st_pipeline
  ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …
  ☆79Updated last month
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆43Updated 9 months ago
• rajewsky-lab / spacemake
  ☆43Updated last week
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆51Updated last week
• tanaylab / metacells
  Metacells - Single-cell RNA Sequencing Analysis
  ☆104Updated 7 months ago
• welch-lab / MultiVelo
  Multi-omic velocity inference
  ☆110Updated 6 months ago
• theislab / anndata2ri
  Convert between AnnData and SingleCellExperiment
  ☆132Updated this week
• emdann / milopy
  Python implementation of Milo for differential abundance testing on KNN graph
  ☆67Updated 2 months ago
• settylab / Mellon
  Non-parametric density inference for single-cell analysis.
  ☆69Updated last month
• aertslab / scenicplus_analyses
  SCENIC+ analyses
  ☆14Updated last year
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆60Updated 10 months ago
• drieslab / awesome-spatial-data-analysis
  Awesome list of tools and methods to perform spatial transcriptomic data analysis.
  ☆40Updated 3 years ago