A constraint-based method for prediction of metabolic engineering targets using ecModels of metabolism
☆15Feb 12, 2025Updated last year
Alternatives and similar repositories for ecFactory
Users that are interested in ecFactory are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆53Aug 23, 2026Updated last week
- novoStoic2.0: Integrated Pathway Design Tool with Thermodynamic Considerations and Enzyme Selection☆11Apr 28, 2025Updated last year
- A container for all enzyme constrained models created by GECKO.☆17Jul 4, 2022Updated 4 years ago
- ☆20Aug 29, 2025Updated last year
- ☆11Oct 21, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Enzyme-constrained genome-scale models in python☆38Oct 25, 2023Updated 2 years ago
- An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as…☆70Aug 15, 2026Updated 2 weeks ago
- Toolbox for including enzyme constraints on a genome-scale model.☆91Updated this week
- Teaching materials for cobrapy, cameo, escher and DD-DeCaF☆28Jul 12, 2022Updated 4 years ago
- Toolkit for Modelling and Simulation of Gene Expressions and Metabolism☆13Apr 1, 2026Updated 4 months ago
- ☆10Dec 15, 2023Updated 2 years ago
- Uncover organisms' metabolic blueprints☆18Jun 18, 2024Updated 2 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆40Jan 11, 2019Updated 7 years ago
- ☆15May 8, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA☆32Nov 7, 2024Updated last year
- A Universal Modeling Language for Metabolic Flux Analysis☆12Aug 10, 2026Updated 2 weeks ago
- A Bio2BEL package for DrugBank (https://www.drugbank.ca)☆10Dec 14, 2020Updated 5 years ago
- Python-code to analyse Raman spectroscopy☆15Apr 19, 2019Updated 7 years ago
- Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…☆12May 8, 2024Updated 2 years ago
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆20Oct 21, 2022Updated 3 years ago
- 先進ゲノム支援中級者講習会2019☆10Oct 11, 2019Updated 6 years ago
- Machine Learning models for in vitro enzyme kinetic parameter prediction☆96Jun 15, 2026Updated 2 months ago
- Results and data from the pilot round of the Protein Engineering Tournament☆30Mar 25, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Constraint-based Metabolic Modeling Course☆11Jul 25, 2022Updated 4 years ago
- プログラミング演習1/実践データサイエンス☆11Jul 9, 2026Updated last month
- Independent evaluation set construction for trustworthy ML models in biochemistry☆15Updated this week
- ☆10Sep 29, 2023Updated 2 years ago
- rspatial website using terra☆13Jun 7, 2026Updated 2 months ago
- ☆38Oct 23, 2025Updated 10 months ago
- A database of In-Silico predicted MS/MS spectrum of Natural Products☆15Sep 24, 2022Updated 3 years ago
- Semi-Supervised Regression☆12Jul 19, 2019Updated 7 years ago
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- D3.js based visualizations of cobrapy metabolic models☆52Mar 10, 2020Updated 6 years ago
- Files for the Genome Design/Genome Analytics Short-course organized by the SBRG☆10Nov 30, 2021Updated 4 years ago
- Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities 2022☆13Jan 8, 2024Updated 2 years ago
- A tool to create dependency graphs of ideas (useful for presentation or teaching)☆12Oct 31, 2024Updated last year
- Encoding Dynamic Flux Balance Analysis in SBML☆13Sep 16, 2020Updated 5 years ago
- Implementation of "Semi-supervised learning of hierarchical representations of molecules using neural message passing" (arXiv:1711.10168)☆14Jun 20, 2018Updated 8 years ago
- Calculate chlorpromazine-equivalent doses in R☆15Mar 14, 2021Updated 5 years ago