A constraint-based method for prediction of metabolic engineering targets using ecModels of metabolism
☆15Feb 12, 2025Updated last year
Alternatives and similar repositories for ecFactory
Users that are interested in ecFactory are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- FluxGAT introduces a graph neural network (GNN) model designed to predict gene essentiality by utilising graphical representations derive…☆11Mar 5, 2026Updated 7 months ago
- A container for all enzyme constrained models created by GECKO.☆19Sep 24, 2026Updated last month
- novoStoic2.0: Integrated Pathway Design Tool with Thermodynamic Considerations and Enzyme Selection☆11Apr 28, 2025Updated last year
- ☆11Oct 21, 2023Updated 3 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆53Oct 7, 2026Updated 3 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as…☆71Updated this week
- ☆11Dec 15, 2023Updated 2 years ago
- ☆21Aug 29, 2025Updated last year
- Enzyme-constrained genome-scale models in python☆39Oct 25, 2023Updated 3 years ago
- Toolbox for including enzyme constraints on a genome-scale model. This repository holds GECKO 3.x; GECKO 4 is developed in CompMetEng/GEC…☆95Oct 16, 2026Updated last week
- REKINDLE is a python package for training the generative adversarial networks (GANs) to parametrize large-scale nonlinear kinetic models …☆10Oct 11, 2022Updated 4 years ago
- Metabolic Engineering Workbench☆43Jun 9, 2024Updated 2 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆40Jan 11, 2019Updated 7 years ago
- Toolkit for Modelling and Simulation of Gene Expressions and Metabolism☆13Apr 1, 2026Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Teaching materials for cobrapy, cameo, escher and DD-DeCaF☆29Jul 12, 2022Updated 4 years ago
- teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …☆46Oct 22, 2026Updated last week
- Symbolic Kinetic Models with Python☆38Jun 4, 2025Updated last year
- Pathway Tools multiprocessing wrapper (for PathoLogic).☆16Oct 19, 2026Updated last week
- Encoding Dynamic Flux Balance Analysis in SBML☆13Sep 16, 2020Updated 6 years ago
- A Universal Modeling Language for Metabolic Flux Analysis☆12Oct 8, 2026Updated 3 weeks ago
- Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA☆33Nov 7, 2024Updated last year
- Uncover organisms' metabolic blueprints☆18Jun 18, 2024Updated 2 years ago
- A Bio2BEL package for DrugBank (https://www.drugbank.ca)☆10Dec 14, 2020Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆16May 8, 2026Updated 5 months ago
- Python-code to analyse Raman spectroscopy☆15Apr 19, 2019Updated 7 years ago
- Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…☆12May 8, 2024Updated 2 years ago
- Understanding metabolism is fundamental in biomedical and plant research and the identification and quantification of thousands of metabo…☆13Oct 21, 2026Updated last week
- My solutions to the programming exercises from Stanford's Machine Learning online course☆12Dec 21, 2011Updated 14 years ago
- ☆19May 8, 2024Updated 2 years ago
- EasyHybrid3, a pDynamo graphical environment.☆17Updated this week
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆20Oct 21, 2022Updated 4 years ago
- 先進ゲノム支援中級者講習会2019☆10Oct 11, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆38Oct 23, 2025Updated last year
- A database of In-Silico predicted MS/MS spectrum of Natural Products☆15Sep 24, 2022Updated 4 years ago
- Machine Learning Tutorials☆13Jan 12, 2017Updated 9 years ago
- Independent evaluation set construction for trustworthy ML models in biochemistry☆15Aug 24, 2026Updated 2 months ago
- Code for GEMS☆10Apr 18, 2026Updated 6 months ago
- ☆10Sep 29, 2023Updated 3 years ago
- Machine Learning models for in vitro enzyme kinetic parameter prediction☆98Jun 15, 2026Updated 4 months ago