SvetlanaUP / Microbiome-conferences-c
This repo collects the list of conferences/meetings/workshops etc. related to microbiome science and tools.
☆42Updated this week
Related projects: ⓘ
- ☆46Updated 2 weeks ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆26Updated last year
- Metagenomics-related extended functionalities to samtools☆18Updated last year
- SHallow shOtGUN profiler☆54Updated 2 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated last year
- This repo collects the list of learning online resources related to microbiome computational science and tools.☆25Updated last year
- gutSMASH☆51Updated 4 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆52Updated 3 weeks ago
- BEAV: Bacterial Element Annotation reVamped☆55Updated 2 weeks ago
- Materials and presentation for the 2023 ISB Microbiome course.☆20Updated 3 months ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆24Updated 4 years ago
- ☆17Updated last year
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated last year
- Batch effects removal for microbiome data via conditional quantile regression☆26Updated 2 years ago
- Compare different differential abundance and expression methods☆49Updated 2 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆47Updated 2 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆51Updated 2 weeks ago
- This repo collects the list of podcasts related to microbiome science: science, microbiology and bioinformatics.☆12Updated 3 months ago
- ☆15Updated 2 weeks ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆68Updated 4 years ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆26Updated 3 months ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆25Updated 5 years ago
- Metagenomic classification of long-read sequencing data☆55Updated this week
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆87Updated last month
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆31Updated this week
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆31Updated 4 years ago
- Convert GTDB taxonomy to NCBI taxdump format☆65Updated last year
- Sparse Cooccurence Network Investigation for Compositional data☆21Updated 2 weeks ago
- ☆31Updated 2 weeks ago
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆11Updated 2 years ago