SvetlanaUP / Microbiome-conferences-c
This repo collects the list of conferences/meetings/workshops etc. related to microbiome science and tools.
☆51Updated last week
Alternatives and similar repositories for Microbiome-conferences-c:
Users that are interested in Microbiome-conferences-c are comparing it to the libraries listed below
- This repo collects the list of podcasts related to microbiome science: science, microbiology and bioinformatics.☆24Updated 5 months ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆29Updated last year
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated 8 months ago
- ☆54Updated 3 weeks ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆35Updated last month
- ARG normalization by mapping to the ARO ontology.☆47Updated last week
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆72Updated 2 years ago
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 3 months ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆70Updated 2 years ago
- Materials and presentation for the 2023 ISB Microbiome course.☆24Updated 7 months ago
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- ☆69Updated last month
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆65Updated last year
- Analyses in R and Python Using curatedMetagenomicData☆31Updated 3 weeks ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆59Updated 4 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated last year
- ☆50Updated 2 months ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆70Updated 8 months ago
- Convert GTDB taxonomy to NCBI taxdump format☆68Updated last year
- Course material for the metagenomics course☆44Updated 3 years ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 4 years ago
- 🍄 Qiime2 ITS classifiers for the UNITE database☆37Updated last month
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- Bioinformatics Tools☆87Updated 3 weeks ago
- ☆50Updated last year
- gutSMASH☆53Updated 4 months ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- functions for analyzing phyloseq data☆27Updated 2 months ago