Alternatives and similar repositories for Microbiome-conferences-c

Users that are interested in Microbiome-conferences-c are comparing it to the libraries listed below

• SvetlanaUP / Microbiome-etc-Podcasts
  This repo collects the list of podcasts related to microbiome science: science, microbiology and bioinformatics.
  ☆30Updated 3 months ago
• Sydney-Informatics-Hub / Shotgun-Metagenomics-Analysis
  Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more
  ☆37Updated 2 years ago
• AstrobioMike / bit
  Bioinformatics Tools
  ☆89Updated last week
• bjtully / BioData
  All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")
  ☆79Updated 2 years ago
• grimmlab / MicrobiomeBestPracticeReview
  Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
  ☆121Updated last year
• nmquijada / tormes
  Making whole bacterial genome sequencing data analysis easy
  ☆113Updated 7 months ago
• Zymo-Research / figaro
  An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters
  ☆92Updated last year
• biobakery / maaslin3
  MaAsLin3: Microbiome Multivariate Association with Linear Models
  ☆49Updated last week
• mdsufz / MuDoGeR
  MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.
  ☆88Updated last year
• treangenlab / emu
  ☆74Updated last month
• benjjneb / decontam
  Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
  ☆165Updated 2 months ago
• colinbrislawn / unite-train
  🍄 Qiime2 ITS classifiers for the UNITE database
  ☆46Updated 3 months ago
• Gibbons-Lab / isb_course_2023
  Materials and presentation for the 2023 ISB Microbiome course.
  ☆24Updated last year
• karkman / MetagenomeCourse2019
  Course material for the metagenomics course
  ☆46Updated 3 years ago
• rrwick / Perfect-bacterial-genome-tutorial
  ☆150Updated last year
• nvelden / geneviewer
  An R package designed for drawing gene arrow maps
  ☆92Updated 2 months ago
• david-barnett / microViz
  R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.
  ☆123Updated 3 months ago
• bhattlab / kraken2_classification
  Snakemake workflow for metagenomic classification with Kraken2
  ☆66Updated 2 years ago
• ParkinsonLab / Metatranscriptome-Workshop
  Metatranscriptomics Tutorial
  ☆66Updated 2 years ago
• PacificBiosciences / HiFi-16S-workflow
  Nextflow pipeline to analyze PacBio HiFi full-length 16S data
  ☆87Updated 4 months ago
• zoecastillo / microbiomeExplorer
  The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…
  ☆72Updated 3 years ago
• SvetlanaUP / A-microbiologist-wants-to-compute
  This repo collects the list of learning online resources related to microbiome computational science and tools.
  ☆100Updated last year
• simon-ho / SydneyPhyloWorkshop
  Sydney Phylogenetics Workshop
  ☆67Updated 4 months ago
• waldronlab / curatedMetagenomicDataAnalyses
  Analyses in R and Python Using curatedMetagenomicData
  ☆32Updated last week
• SegataLab / cFMD
  Public repository for cFMD - curatedFoodMetagenomicData
  ☆31Updated last week
• jlw-ecoevo / gRodon
  ☆17Updated 2 years ago
• gmteunisse / fantaxtic
  Fantaxtic - Nested Bar Plots for Phyloseq Data
  ☆32Updated last year
• nick-youngblut / gtdb_to_taxdump
  Convert GTDB taxonomy to NCBI taxdump format
  ☆72Updated 2 years ago
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆124Updated 2 years ago
• SegataLab / lefse
  ☆85Updated last year