SvetlanaUP / A-microbiologist-wants-to-compute
This repo collects the list of learning online resources related to microbiome computational science and tools.
☆77Updated last week
Related projects ⓘ
Alternatives and complementary repositories for A-microbiologist-wants-to-compute
- Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline☆37Updated 10 months ago
- Bioconductor teaching and education committee☆41Updated last week
- Download files from NCBI Entrez by accession☆111Updated 2 months ago
- ☆119Updated 5 months ago
- Make Picrust2 Output Analysis and Visualization Easier☆109Updated last week
- This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.☆46Updated last month
- Bioinformatics Tools☆81Updated 3 weeks ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆109Updated 6 months ago
- fast phage annotation program☆148Updated this week
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆111Updated last year
- SIB course that introduces analysis of NGS data☆15Updated this week
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆160Updated this week
- FunGAP: fungal Genome Annotation Pipeline☆109Updated last year
- Pipeline for metabolic annotation of microbial genomes☆140Updated 4 months ago
- Download FASTQ files from SRA or ENA repositories.☆277Updated last month
- Tool to plot synteny and structural rearrangements between genomes☆286Updated this week
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆26Updated last year
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆128Updated this week
- Nextflow training material☆131Updated this week
- Metatranscriptomics Tutorial☆55Updated last year
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆174Updated 3 months ago
- Similarity networks of biosynthetic gene clusters☆73Updated this week
- repository of the 3-day course "First steps with Python in Life Sciences" from SIB-training☆54Updated last month
- A user-friendly workflow for phylogenomics☆204Updated last month
- Convert various sequence formats to FASTA☆127Updated 2 years ago
- geNomad: Identification of mobile genetic elements☆193Updated 2 weeks ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆125Updated 2 years ago
- In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…☆81Updated 6 years ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆146Updated 2 months ago
- MGnify genome analysis pipeline☆101Updated this week