SvetlanaUP / A-microbiologist-wants-to-computeLinks
This repo collects the list of learning online resources related to microbiome computational science and tools.
☆95Updated 8 months ago
Alternatives and similar repositories for A-microbiologist-wants-to-compute
Users that are interested in A-microbiologist-wants-to-compute are comparing it to the libraries listed below
Sorting:
- Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline☆42Updated last year
- This repo collects the list of podcasts related to microbiome science: science, microbiology and bioinformatics.☆29Updated 8 months ago
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆184Updated 2 weeks ago
- This repo collects the list of conferences/meetings/workshops etc. related to microbiome science and tools.☆62Updated 3 months ago
- ☆140Updated last year
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆153Updated 3 months ago
- A user-friendly workflow for phylogenomics☆217Updated this week
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆208Updated 11 months ago
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆244Updated last year
- Pan-genome wide association studies☆200Updated last year
- Pipeline for metabolic annotation of microbial genomes☆150Updated 4 months ago
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆212Updated 2 weeks ago
- Robs manual for the computational genomics and bioinformatics class.☆256Updated 8 months ago
- Download files from NCBI Entrez by accession☆127Updated 11 months ago
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆158Updated last week
- Tool to plot synteny and structural rearrangements between genomes☆317Updated 4 months ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆156Updated last year
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆151Updated last month
- ☆52Updated last year
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆120Updated last year
- snipit: summarise snps relative to your reference sequence☆163Updated 2 months ago
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆144Updated 8 months ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆33Updated 2 years ago
- This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.☆52Updated last week
- Bioinformatics Tools☆89Updated last week
- Metatranscriptomics Tutorial☆63Updated 2 years ago
- A robust, extensible metagenomics pipeline☆172Updated this week
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆117Updated 2 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆141Updated 2 weeks ago
- Assembly and intrahost/low-frequency variant calling for viral samples☆139Updated last month