Alternatives and similar repositories for A-microbiologist-wants-to-compute:

Users that are interested in A-microbiologist-wants-to-compute are comparing it to the libraries listed below

• digo4 / Clinical-Genomics
  Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
  ☆39Updated last year
• rrwick / Perfect-bacterial-genome-tutorial
  ☆131Updated 10 months ago
• SvetlanaUP / Microbiome-etc-Podcasts
  This repo collects the list of podcasts related to microbiome science: science, microbiology and bioinformatics.
  ☆24Updated 5 months ago
• sib-swiss / sequencing-data-analysis-training
  SIB course that introduces analysis of NGS data
  ☆16Updated last week
• Bioconductor / bioconductor-training
  Bioconductor teaching and education committee
  ☆48Updated 3 weeks ago
• gbouras13 / pharokka
  fast phage annotation program
  ☆161Updated 3 months ago
• nf-core / taxprofiler
  Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
  ☆144Updated last week
• jotech / gapseq
  Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
  ☆178Updated this week
• kblin / ncbi-acc-download
  Download files from NCBI Entrez by accession
  ☆122Updated 7 months ago
• biobakery / humann
  HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
  ☆193Updated 8 months ago
• linnabrown / run_dbcan
  Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…
  ☆149Updated 3 months ago
• cruizperez / MicrobeAnnotator
  Pipeline for metabolic annotation of microbial genomes
  ☆144Updated last month
• AstrobioMike / bit
  Bioinformatics Tools
  ☆87Updated 3 weeks ago
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆303Updated 2 weeks ago
• apcamargo / genomad
  geNomad: Identification of mobile genetic elements
  ☆229Updated last month
• biobakery / biobakery_workflows
  bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…
  ☆111Updated last week
• evanpeikon / bash_fundamentals
  Introduction to Bash for bioinformatics
  ☆45Updated 8 months ago
• bpucker / teaching
  This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.
  ☆51Updated 6 months ago
• sib-swiss / first-steps-with-python-training
  repository of the 3-day course "First steps with Python in Life Sciences" from SIB-training
  ☆59Updated last month
• nf-core / ampliseq
  Amplicon sequencing analysis workflow using DADA2 and QIIME2
  ☆200Updated this week
• AstrobioMike / GToTree
  A user-friendly workflow for phylogenomics
  ☆210Updated this week
• CompSynBioLab-KoreaUniv / FunGAP
  FunGAP: fungal Genome Annotation Pipeline
  ☆111Updated last year
• Sydney-Informatics-Hub / Shotgun-Metagenomics-Analysis
  Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more
  ☆29Updated last year
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆226Updated 4 years ago
• ParkinsonLab / Metatranscriptome-Workshop
  Metatranscriptomics Tutorial
  ☆62Updated last year
• NBISweden / GAAS
  Genome Assembly and Annotation Service code
  ☆211Updated last year
• ncbi / egapx
  Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation
  ☆134Updated 3 weeks ago
• motu-tool / mOTUs
  motus - a tool for marker gene-based OTU (mOTU) profiling
  ☆152Updated 11 months ago
• rpetit3 / fastq-dl
  Download FASTQ files from SRA or ENA repositories.
  ☆320Updated last month
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆137Updated 3 years ago