SvetlanaUP / A-microbiologist-wants-to-computeLinks
This repo collects the list of learning online resources related to microbiome computational science and tools.
☆96Updated 9 months ago
Alternatives and similar repositories for A-microbiologist-wants-to-compute
Users that are interested in A-microbiologist-wants-to-compute are comparing it to the libraries listed below
Sorting:
- Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline☆43Updated last year
- This repo collects the list of podcasts related to microbiome science: science, microbiology and bioinformatics.☆29Updated this week
- This repo collects the list of conferences/meetings/workshops etc. related to microbiome science and tools.☆62Updated this week
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆186Updated this week
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆208Updated last year
- This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.☆52Updated last month
- A user-friendly workflow for phylogenomics☆219Updated 3 weeks ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆154Updated 4 months ago
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆247Updated last year
- motus - a tool for marker gene-based OTU (mOTU) profiling☆157Updated last year
- Download files from NCBI Entrez by accession☆127Updated 11 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆141Updated last month
- Pipeline for metabolic annotation of microbial genomes☆150Updated 5 months ago
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆213Updated last week
- Robs manual for the computational genomics and bioinformatics class.☆261Updated 9 months ago
- A robust, extensible metagenomics pipeline☆174Updated last week
- Introduction to Bash for bioinformatics☆48Updated last year
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆161Updated last week
- ☆143Updated last year
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆35Updated 2 years ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆154Updated 2 months ago
- Metatranscriptomics Tutorial☆63Updated 2 years ago
- Tool to plot synteny and structural rearrangements between genomes☆318Updated 4 months ago
- Bioinformatics Tools☆89Updated 2 weeks ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆121Updated last year
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆145Updated 9 months ago
- Pipeline to fetch metadata and raw FastQ files from public databases☆178Updated last month
- What should perfect bioinformatic tools be like?☆131Updated 3 months ago
- snipit: summarise snps relative to your reference sequence☆164Updated 3 months ago
- bioBakery tools for meta'omic profiling☆285Updated 2 months ago