Alternatives and similar repositories for ProtSCAPE:

Users that are interested in ProtSCAPE are comparing it to the libraries listed below

• anton-bushuiev / PPIformer
  Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)
  ☆47Updated 2 weeks ago
• Kuhlman-Lab / PIPPack
  Implementation of Protein Invariant Point Packer (PIPPack)
  ☆31Updated 8 months ago
• Profluent-Internships / MMDiff
  Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion
  ☆54Updated 8 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆40Updated last month
• kirjner / GGS
  This repository implements Gibbs sampling with Graph-based Smoothing
  ☆36Updated 8 months ago
• LDeng0205 / confidence-bootstrapping
  Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.
  ☆26Updated 11 months ago
• Marco-Peg / GEP
  ☆13Updated 10 months ago
• petergroth / FLOP
  This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.
  ☆21Updated last year
• compsciencelab / mdCATH
  This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…
  ☆31Updated 2 months ago
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆30Updated 2 months ago
• Graylab / MaskedProteinEnT
  ☆11Updated last month
• navid-naderi / PLM_SWE
  Implementation code for the paper "Aggregating Residue-Level Protein Language Model Embeddings with Optimal Transport"
  ☆16Updated last month
• BioinfoMachineLearning / EnQA
  A 3D-equivariant neural network for protein structure accuracy estimation
  ☆18Updated last year
• EureKaZhu / DiffAffinity
  Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)
  ☆31Updated last year
• Minys233 / Dynaformer
  ☆29Updated 7 months ago
• JocelynSong / NAEPro
  ☆11Updated last year
• casperg92 / MaSIF_colab
  dMaSIF implementation for google colab
  ☆29Updated last year
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆23Updated last month
• barricklab-at-jhu / SVD-of-MSAs
  This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…
  ☆11Updated 5 months ago
• Bhattacharya-Lab / EquiPNAS
  pLM-informed E(3) equivariant deep graph neural networks for protein-nucleic acid binding site prediction
  ☆21Updated 9 months ago
• sirius777coder / GPDL
  Generative diverse protein backbones by protein language model
  ☆29Updated last month
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆26Updated last year
• ohuelab / ColabDesign-cyclic-binder
  ☆29Updated last year
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆32Updated 4 months ago
• ProteinDesignLab / IgVAE
  A variational autoencoder that directly generates the 3D coordinates of immunoglobulin protein backbones.
  ☆25Updated 2 years ago
• tyang816 / VenusREM
  Augmenting zero-shot mutant prediction by retrieval-based logits fusion.
  ☆33Updated 2 weeks ago
• ml4bio / RiboDiffusion
  ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models
  ☆35Updated 2 months ago
• tyang816 / ProtSSN
  Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2024…
  ☆51Updated 3 weeks ago
• BioinfoMachineLearning / ATOMRefine
  3D equivariant graph transformer for all-atom refinement of protein tertiary structures
  ☆25Updated last year
• Immortals-33 / Scaffold-Lab
  A comprehensive benchmark on the performances of multiple protein backbone generative models.
  ☆47Updated last week