☆20Oct 3, 2024Updated last year
Alternatives and similar repositories for ProtSCAPE
Users that are interested in ProtSCAPE are comparing it to the libraries listed below
Sorting:
- Code for the paper "OneProt: Towards Multi-Modal Protein Foundation Models"☆22Oct 31, 2025Updated 4 months ago
- ☆17Oct 27, 2024Updated last year
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆57Dec 16, 2025Updated 3 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆33Jun 9, 2024Updated last year
- Molecular dynamics without molecules: searching the conformational space of proteins with generative neural networks☆11Jun 13, 2022Updated 3 years ago
- ☆10Oct 31, 2025Updated 4 months ago
- Benchmarking code accompanying the release of `bioemu`☆55Nov 25, 2025Updated 3 months ago
- Generative modeling of molecular dynamics trajectories☆204Nov 23, 2025Updated 3 months ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆55Jan 28, 2026Updated last month
- DyNoPy☆11Sep 5, 2024Updated last year
- ☆29Oct 7, 2024Updated last year
- ☆14Jan 8, 2025Updated last year
- Deep reinforcement learning for protein complex modeling☆11May 28, 2022Updated 3 years ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆150Apr 16, 2025Updated 11 months ago
- Conformational sampling for highly flexible proteins☆15Jan 31, 2025Updated last year
- ☆12Apr 6, 2024Updated last year
- The official GitHub repository for the Nature Communications paper "Computational Design of Generalist Cyclopropanases with Stereodiverge…☆13Jan 23, 2026Updated last month
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆47Oct 28, 2023Updated 2 years ago
- Multiscale earth mover's distance methods for tree and manifold structured data☆12Mar 8, 2025Updated last year
- Official Implemetation of ConfDiff (ICML'24) - Protein Conformation Generation via Force-Guided SE(3) Diffusion Models☆78Sep 12, 2024Updated last year
- ☆34Jun 29, 2024Updated last year
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- Versatile human antibody sequence design☆22May 27, 2025Updated 9 months ago
- Residue Level Alignment☆22Nov 21, 2024Updated last year
- ☆39Oct 22, 2024Updated last year
- This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…☆21Oct 31, 2025Updated 4 months ago
- Code for the paper "Learning to engineer protein flexibility".☆22Jan 21, 2026Updated last month
- [Bioinformatics 2022] Cross-Modality and Self-Supervised Protein Embedding for Compound-Protein Affinity and Contact Prediction☆16Jun 6, 2024Updated last year
- NeuralMD for Protein-ligand Binding Simulation, Nature Communicaitons 2025 https://www.nature.com/articles/s41467-025-67808-z☆42Nov 4, 2025Updated 4 months ago
- [NeurIPS 2024] The implementation for the paper "Geometric Trajectory Diffusion Models".☆35Jul 22, 2025Updated 7 months ago
- Python package for P2 (Path Planning), a masked diffusion model sampling method for sequence generation (protein, text, etc.).☆23Aug 19, 2025Updated 7 months ago
- RNA sequence design for a target protein sequence☆13Mar 12, 2026Updated last week
- De novo design of small molecule binding sites into proteins☆12Apr 14, 2021Updated 4 years ago
- protein backbone refinement☆15Sep 12, 2024Updated last year
- ☆21May 24, 2024Updated last year
- PaCS-Toolkit: Optimized software utilities for PaCS-MD and following analysis☆23Dec 14, 2025Updated 3 months ago
- The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was deve…☆33Dec 14, 2023Updated 2 years ago
- LoRA for protein language models☆48Jan 24, 2024Updated 2 years ago
- Deep generative modeling of protein structural ensembles☆37Sep 22, 2025Updated 5 months ago