Alternatives and similar repositories for ProtSCAPE

Users that are interested in ProtSCAPE are comparing it to the libraries listed below

• KoubaPetr / Flexpert
  Code for the paper "Learning to engineer protein flexibility".
  ☆22Updated last month
• Vincentx15 / atomsurf
  ☆24Updated 2 months ago
• mgreenig / IgCraft
  Versatile human antibody sequence design
  ☆21Updated 7 months ago
• Profluent-Internships / MMDiff
  Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion
  ☆58Updated last year
• barricklab-at-jhu / SVD-of-MSAs
  This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…
  ☆11Updated last year
• Minys233 / Dynaformer
  ☆34Updated last year
• Kuhlman-Lab / PIPPack
  Implementation of Protein Invariant Point Packer (PIPPack)
  ☆35Updated last year
• ai4protein / VenusX
  ☆15Updated 3 months ago
• Marco-Peg / GEP
  ☆15Updated last year
• compsciencelab / mdCATH
  This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…
  ☆53Updated last month
• BioinfoMachineLearning / EnQA
  A 3D-equivariant neural network for protein structure accuracy estimation
  ☆20Updated 2 years ago
• JocelynSong / NAEPro
  ☆12Updated 2 years ago
• vsomnath / flexdock
  Composing Unbalanced Flows for Flexible Docking and Relaxation (ICLR 2025)
  ☆54Updated 6 months ago
• casperg92 / MaSIF_colab
  dMaSIF implementation for google colab
  ☆36Updated 2 years ago
• zaixizhang / FAIR
  NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement
  ☆47Updated 2 years ago
• LDeng0205 / StaB-ddG
  Predicting mutational effects on protein binding from folding energy. ICML 2025.
  ☆36Updated 5 months ago
• anton-bushuiev / PPIformer
  Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)
  ☆50Updated last month
• lamm-mit / ProteinMechanicsDiffusionDesign
  ☆27Updated last year
• mjendrusch / salad
  protein structure generation with sparse all-atom denoising models
  ☆54Updated last month
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆35Updated last year
• sirius777coder / GPDL
  Generative diverse protein backbones by protein language model
  ☆34Updated 2 months ago
• microsoft / bioemu-benchmarks
  Benchmarking code accompanying the release of `bioemu`
  ☆52Updated last month
• Immortals-33 / Scaffold-Lab
  A comprehensive benchmark on the performances of multiple protein backbone generative models.
  ☆65Updated 7 months ago
• hits-mli / gafl
  Geometric Algebra Flow Matching (GAFL) for Protein Backbone Generation
  ☆17Updated 2 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆60Updated 7 months ago
• LDeng0205 / confidence-bootstrapping
  Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.
  ☆27Updated last year
• LSSI-ETH / meta-learning-for-protein-engineering
  Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering (https://doi.org/10.1016/j.cels.2023…
  ☆20Updated last year
• BioinfoMachineLearning / GCPNet
  A geometry-complete SE(3)-equivariant perceptron network (GCPNet) for 3D graphs. (Bioinformatics)
  ☆52Updated 8 months ago
• LirongWu / Uni-Anti
  Code fo ICLR2025 paper "A Simple yet Effective DDG Predictor is An Unsupervised Antibody Optimizer and Explainer"
  ☆20Updated 6 months ago
• Croydon-Brixton / proteinmpnn_wrapper
  A thin wrapper around ProteinMPNN for convenient sampling without having to write out or consume files
  ☆12Updated last year