KrishnaswamyLab / ProtSCAPE
☆11Updated last month
Related projects ⓘ
Alternatives and complementary repositories for ProtSCAPE
- Implementation of Protein Invariant Point Packer (PIPPack)☆30Updated 5 months ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆51Updated 6 months ago
- Equivariant Scalar Fields for Molecular Docking with Fast Fourier Transforms☆26Updated 11 months ago
- ☆11Updated last year
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Updated 3 months ago
- A 3D-equivariant neural network for protein structure accuracy estimation☆18Updated last year
- ☆10Updated last year
- Cython implementation of PDB -> DataFrame parsing☆22Updated last year
- ☆29Updated 4 months ago
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆25Updated 8 months ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆44Updated last month
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆32Updated last week
- This repository implements Gibbs sampling with Graph-based Smoothing☆36Updated 5 months ago
- [Bioinformatics 2022] Cross-Modality and Self-Supervised Protein Embedding for Compound-Protein Affinity and Contact Prediction☆12Updated 5 months ago
- Generative diverse protein backbones by protein language model☆24Updated last week
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆30Updated 11 months ago
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆25Updated last week
- protein backbone refinement☆15Updated 2 months ago
- ☆23Updated last month
- pLM-informed E(3) equivariant deep graph neural networks for protein-nucleic acid binding site prediction☆20Updated 7 months ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆20Updated 4 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆33Updated 2 months ago
- dMaSIF implementation for google colab☆29Updated last year
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆47Updated last month
- ☆42Updated last year
- A variational autoencoder that directly generates the 3D coordinates of immunoglobulin protein backbones.☆25Updated 2 years ago
- Topological transformer for protein-ligand complex interaction prediction.☆29Updated 4 months ago
- Differentiable Pairing using Alignment-based Language Models☆17Updated 10 months ago
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆25Updated last year
- ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models☆30Updated last week