Software used by Trinity CTAT for building CTAT Genome Libs, resource databases shared by Trinity CTAT components
☆12Apr 28, 2025Updated last year
Alternatives and similar repositories for ctat-genome-lib-builder
Users that are interested in ctat-genome-lib-builder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R implementation of the BAGEL method to call for gene essentiality significance☆11May 1, 2018Updated 8 years ago
- ☆23Oct 23, 2023Updated 2 years ago
- ☆17Nov 11, 2022Updated 3 years ago
- Tools for doing x way meta-analysis☆12Apr 12, 2022Updated 4 years ago
- Citation parsing to quickly access publications☆15Aug 22, 2017Updated 9 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆27Nov 21, 2022Updated 3 years ago
- Greening lab hydrogenase database☆19Jun 26, 2025Updated last year
- BamDeal: a comprehensive toolkit for bam manipulation☆15Dec 21, 2022Updated 3 years ago
- Antimicrobial Peptide Structural Evolution Miner (AMP-SEMiner), an integrated AI framework designed for the simultaneous identification o…☆14May 10, 2025Updated last year
- ☆33May 2, 2022Updated 4 years ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Jun 22, 2026Updated 3 months ago
- Python package to annotate and visualize gene fusions.☆67Apr 14, 2026Updated 5 months ago
- Gossamer bioinformatics suite☆23Dec 4, 2024Updated last year
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Filters for Next Generation Sequencing☆13Oct 31, 2024Updated last year
- ☆21Jun 20, 2022Updated 4 years ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆79Jan 13, 2026Updated 9 months ago
- Pipeline for generating RNAseq-based cancer patient reports☆15Aug 24, 2026Updated last month
- Known and Novel IsoForm Explorer. Statistically based splicing detection for circular and linear isoforms☆33Jul 14, 2017Updated 9 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Nov 20, 2020Updated 5 years ago
- ☆13Sep 22, 2026Updated 3 weeks ago
- Implements the blood brain barrier score described in: J. Med. Chem. 2019, 62, 21, 9824-9836 (https://doi.org/10.1021/acs.jmedchem.9b0122…☆14Sep 27, 2020Updated 6 years ago
- ☆12May 12, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- python module for querying the vicc knowledgebase integration datastore☆11Jul 6, 2023Updated 3 years ago
- Kdrew's scripts for handling protein complex map data☆14Jun 17, 2026Updated 3 months ago
- ICDO: International Classification of Diseases Ontology☆12Apr 19, 2024Updated 2 years ago
- ☆21Updated this week
- Regulatory network inference and driver gene evaluation using integrative multi-omics analysis and penalized regression☆18Jan 26, 2026Updated 8 months ago
- ☆16Sep 1, 2023Updated 3 years ago
- R implementation of Robust Rank Aggregation algortihm☆12Jun 8, 2022Updated 4 years ago
- Code and analysis for the 1000 tools paper☆11Nov 12, 2021Updated 4 years ago
- Methylation array analysis pipeline for CPTAC☆10Sep 1, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- The ECCsplorer is a bioinformatics pipeline for the automated detection of extrachromosomal circular DNA (eccDNA) from paired-end read da…☆21Apr 15, 2024Updated 2 years ago
- P450Diffusion: A tool for designing P450 sequences based on diffusion model☆27Apr 28, 2026Updated 5 months ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆14Feb 29, 2020Updated 6 years ago
- A makeshift python program which relies on nltk and Stanford Core NLP models to expand common contractions in the english language.☆10Nov 8, 2017Updated 8 years ago
- Python xml.sax☆10Mar 19, 2019Updated 7 years ago
- Scripts used to generate the data/figures contained in "Single Cell Transcriptomics Reveals Cell Type Specific Diversification in Human H…☆15Mar 10, 2023Updated 3 years ago
- ☆25Sep 10, 2026Updated last month