Alternatives and similar repositories for ctat-genome-lib-builder:

Users that are interested in ctat-genome-lib-builder are comparing it to the libraries listed below

• STAR-Fusion / STAR-Fusion-Tutorial
  Tutorial for STAR-Fusion, FusionInspector, and de novo reconstruction of fusion transcripts using Trinity
  ☆14Updated 5 years ago
• TrinityCTAT / ctat-mutations
  Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19
  ☆74Updated 5 months ago
• nf-core / airrflow
  B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
  ☆56Updated last week
• Xinglab / IRIS
  IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening
  ☆24Updated 4 months ago
• nf-core / rnasplice
  rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
  ☆50Updated 3 weeks ago
• YeoLab / singlecell_pnm
  Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…
  ☆20Updated 7 years ago
• Xinglab / PEGASAS
  Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)
  ☆18Updated 2 years ago
• bm2-lab / MUSIC
  model-based understanding of single-cell CRISPR screening
  ☆23Updated last month
• ExpressionAnalysis / HLAProfiler
  Using k-mers to call HLA alleles in RNA sequencing data
  ☆22Updated 6 years ago
• Xinglab / rMATS-DVR
  ☆18Updated 6 years ago
• ambj / MuPeXI
  MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.
  ☆49Updated 5 years ago
• Xinglab / lr2rmats
  Long read to rMATS
  ☆31Updated last year
• KnowEnG / SequencEnG
  An interactive learning resource for next-generation sequencing (NGS) techniques
  ☆27Updated 6 years ago
• LuyiTian / FLAMES
  Full-length transcriptome splicing and mutation analysis
  ☆76Updated 6 months ago
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆34Updated 3 years ago
• MonashBioinformaticsPlatform / polyApipe
  polyApipe
  ☆13Updated 3 months ago
• wassermanlab / JASPAR-UCSC-tracks
  Code and data used to create the JASPAR UCSC Genome Browser tracks data hub
  ☆13Updated 2 years ago
• YeoLab / outrigger
  Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data
  ☆65Updated 4 years ago
• TRON-Bioinformatics / EasyFuse
  EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.
  ☆56Updated last month
• wwylab / MuSE
  Somatic point mutation caller
  ☆28Updated last month
• davidliwei / mageck
  Experimental source code for MAGeCK (Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout)
  ☆17Updated 9 years ago
• ConesaLab / tappAS
  This repository contains the source code for the tappAS application. See README for details.
  ☆16Updated last year
• FusionInspector / FusionInspector
  FusionInspector code
  ☆57Updated 2 months ago
• gaolabtools / scNanoGPS
  Single cell Nanopore sequencing data for Genotype and Phenotype
  ☆44Updated this week
• WeiqiangZhou / BIRD
  Big data Regression for predicting DNase I hypersensitivity
  ☆30Updated 4 months ago
• raphael-group / hatchet
  HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…
  ☆69Updated this week
• nf-core / circrna
  circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
  ☆48Updated this week
• xryanglab / xtail
  Genome-wide assessment of differential translations with ribosome profiling data
  ☆19Updated 2 years ago
• Wedge-lab / dpclust
  Dirichlet Process based methods for subclonal reconstruction of tumours
  ☆29Updated 3 months ago
• KChen-lab / MonoVar
  Single nucleotide variant (SNV) detection and genotyping algorithm for single-cell DNA sequencing data
  ☆11Updated 4 years ago