Software used by Trinity CTAT for building CTAT Genome Libs, resource databases shared by Trinity CTAT components
☆12Oct 14, 2026Updated 2 weeks ago
Alternatives and similar repositories for ctat-genome-lib-builder
Users that are interested in ctat-genome-lib-builder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Jun 22, 2026Updated 4 months ago
- R implementation of the BAGEL method to call for gene essentiality significance☆11May 1, 2018Updated 8 years ago
- data repo for fusions found in human genomes and transcriptomes☆10Jan 21, 2024Updated 2 years ago
- ☆23Oct 23, 2023Updated 3 years ago
- Website / continuous DB builds for SingleM☆12Oct 12, 2026Updated 3 weeks ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆17Nov 11, 2022Updated 3 years ago
- STAR-Fusion codebase☆256Oct 14, 2026Updated 2 weeks ago
- PRecise Identification of Species of the Microbiome☆16Apr 29, 2026Updated 6 months ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆27Nov 21, 2022Updated 3 years ago
- Antimicrobial Peptide Structural Evolution Miner (AMP-SEMiner), an integrated AI framework designed for the simultaneous identification o…☆14May 10, 2025Updated last year
- Tools for doing x way meta-analysis☆12Apr 12, 2022Updated 4 years ago
- Citation parsing to quickly access publications☆15Aug 22, 2017Updated 9 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆154Apr 16, 2026Updated 6 months ago
- Gossamer bioinformatics suite☆23Dec 4, 2024Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Greening lab hydrogenase database☆19Jun 26, 2025Updated last year
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- CellReasoner: A reasoning-enhanced large language model for cell type annotation☆10Oct 1, 2025Updated last year
- Auto-parameterizing QC Pipeline for Illumina sequencing runs☆18Jul 9, 2024Updated 2 years ago
- Python package to annotate and visualize gene fusions.☆67Updated this week
- BamDeal: a comprehensive toolkit for bam manipulation☆15Dec 21, 2022Updated 3 years ago
- Focused multi-day workshop covering the material needed for a successful RNA-Seq experiment.☆15Sep 6, 2018Updated 8 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆17Mar 31, 2022Updated 4 years ago
- ☆33May 2, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Nov 20, 2020Updated 5 years ago
- Known and Novel IsoForm Explorer. Statistically based splicing detection for circular and linear isoforms☆33Jul 14, 2017Updated 9 years ago
- An R package that integrates the installation, execution, and benchmark of cutting-edge computational doublet-detection methods.☆12Dec 4, 2022Updated 3 years ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆79Jan 13, 2026Updated 9 months ago
- python module for querying the vicc knowledgebase integration datastore☆11Jul 6, 2023Updated 3 years ago
- ☆13Updated this week
- An R package to create a pretty Copy Number Variant plot from a segments file☆11Feb 25, 2025Updated last year
- ☆21Jun 20, 2022Updated 4 years ago
- ICDO: International Classification of Diseases Ontology☆12Apr 19, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Analytics toolkit for Illumina sequencer metrics.☆12Aug 16, 2024Updated 2 years ago
- ☆21Updated this week
- Analysis scripts and notebooks for Numbat paper☆10Aug 12, 2022Updated 4 years ago
- ☆121Sep 5, 2023Updated 3 years ago
- Kdrew's scripts for handling protein complex map data☆14Jun 17, 2026Updated 4 months ago
- Code and analysis for the 1000 tools paper☆11Nov 12, 2021Updated 4 years ago
- Methylation array analysis pipeline for CPTAC☆10Sep 1, 2022Updated 4 years ago