bcgsc / unikseqLinks
🧬 Unique (& conserved) DNA sequence identification
☆14Updated 7 months ago
Alternatives and similar repositories for unikseq
Users that are interested in unikseq are comparing it to the libraries listed below
Sorting:
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- finding conserved regions in highly diverse genomes☆15Updated 8 months ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 3 years ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆17Updated 2 months ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 2 months ago
- transposable element typing pipeline☆19Updated last year
- a versatile toolkit for processing and analyzing diverse types of sequence data☆22Updated last year
- Assort phage protein sequences into phamilies using MMseqs2☆11Updated last year
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆24Updated 6 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Sketch phylogenetic trees and networks☆24Updated this week
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Updated this week
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Updated last year
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆26Updated last year
- A set of scripts for calculating pairwise SNP distance☆44Updated 3 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- ☆11Updated 4 years ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Updated last year
- software to identify primers that can distinguish genomes☆20Updated 2 weeks ago
- A functional profiler for metagenomes using FracMinHash☆20Updated 6 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆15Updated 8 months ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- Searching DNA/RNA sequence databases with PCR and/or probe queries☆22Updated last year
- TAXnomic Profile Aggregation and STAndardisation☆41Updated 2 months ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22Updated 9 months ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆33Updated 3 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- ZGA prokaryotic genome assembly and annotation pipeline☆13Updated last year
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆62Updated 2 months ago