Alternatives and similar repositories for plotnineseqsuite

Users that are interested in plotnineseqsuite are comparing it to the libraries listed below

• ArcInstitute / ScreenPro2
  Flexible analysis of high-content CRISPR screening
  ☆31Updated 3 months ago
• bcgsc / ntEmbd
  Deep learning embedding for nucleotide sequences
  ☆19Updated 3 months ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆50Updated last month
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆40Updated 2 weeks ago
• IEDB / PEPMatch
  ☆21Updated last week
• santiago1234 / iCodon
  iCodon customizes gene expression based on the codon composition
  ☆15Updated last year
• nf-core / mhcquant
  Identify and quantify MHC eluted peptides from mass spectrometry raw data
  ☆36Updated last week
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆37Updated 2 years ago
• saketkc / pyseqlogo
  Python package to plot sequence logos
  ☆29Updated last year
• CapraLab / cosmis
  COSMIS is a framework for quantifying the mutational constraint on amino acid sites in 3D spatial neighborhoods. The framework currently …
  ☆17Updated 2 years ago
• foerstner-lab / gffpandas
  Parse GFF3 into Pandas dataframes
  ☆28Updated last year
• labomics / MetaLogo
  MetaLogo: a heterogeneity-aware sequence logo generator and aligner
  ☆21Updated 2 years ago
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆23Updated last month
• biosustain / snakemake_UmetaFlow
  Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake
  ☆27Updated 6 months ago
• RTH-tools / crisproff
  off-targeting assessment of Cas9 gRNAs
  ☆13Updated 4 years ago
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆32Updated last month
• betteridiot / seqlogo
  Python port of the R Bioconductor `seqLogo` package
  ☆33Updated 11 months ago
• Neurotechnology-at-ETH-Zurich / siRNA_Design
  Collection of tools to retrieve siRNA (small interfering RNA) candidate sequences targeting your gene of interest from popular siRNA desi…
  ☆11Updated 2 years ago
• Illumina / PrimateAI-3D
  ☆66Updated 4 months ago
• uclahs-cds / package-moPepGen
  Multi-Omics Peptide Generator
  ☆22Updated this week
• althonos / rich-msa
  A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
  ☆85Updated 3 years ago
• jbloomlab / dms_tools2
  software for the analysis and visualization of deep mutational scanning data
  ☆35Updated 2 years ago
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆37Updated last month
• goodarzilab / SwitchFinder
  ☆18Updated last year
• VivianMonzon / Reciprocal_Best_Structure_Hits
  ☆11Updated 2 years ago
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆74Updated last month
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆29Updated last year
• nf-core / epitopeprediction
  A bioinformatics best-practice analysis pipeline for epitope prediction and annotation
  ☆46Updated this week
• vrmelo / SPLICE-q
  SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.
  ☆12Updated last year
• JKoblitz / bacdive-api
  ☆19Updated 7 months ago