Clinical-Genomics / MIP
Mutation Identification Pipeline. Read the latest documentation:
☆44Updated last year
Alternatives and similar repositories for MIP
Users that are interested in MIP are comparing it to the libraries listed below
Sorting:
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated last week
- TIDDIT - structural variant calling☆73Updated last month
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 2 years ago
- mtDNA Variant Caller☆34Updated 4 months ago
- An awk-like VCF parser☆56Updated last year
- R package designed to simplify structural variant analysis☆72Updated 3 years ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆64Updated last year
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆69Updated 8 months ago
- Thousand Variant Callers Project Repository☆72Updated 5 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 3 months ago
- QDNAseq package for Bioconductor☆50Updated 9 months ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated last year
- Read visualizer for structural variants☆83Updated 6 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆105Updated 4 years ago
- A suite of tools for detecting expansions of short tandem repeats☆80Updated last year
- Detection of CNVs (deletion/duplication) in target panel based NGS data☆16Updated last year
- ☆39Updated last year
- Powerful statistics for VCF files☆69Updated last year
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- BigWig and BAM utilities☆96Updated last year
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last week
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS☆49Updated last year
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆52Updated 4 years ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆69Updated this week
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- Data and information about the Polaris study☆53Updated 5 years ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆79Updated last month
- Generic human DNA variant annotation pipeline☆58Updated last year