Clinical-Genomics / MIP
Mutation Identification Pipeline. Read the latest documentation:
☆44Updated last year
Alternatives and similar repositories for MIP:
Users that are interested in MIP are comparing it to the libraries listed below
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆46Updated last week
- TIDDIT - structural variant calling☆73Updated 2 weeks ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆62Updated last year
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆68Updated 7 months ago
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- mtDNA Variant Caller☆34Updated 4 months ago
- Thousand Variant Callers Project Repository☆72Updated 5 years ago
- ☆39Updated last year
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 2 months ago
- R package designed to simplify structural variant analysis☆72Updated 3 years ago
- QDNAseq package for Bioconductor☆50Updated 8 months ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆70Updated 4 years ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated last year
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- Generic human DNA variant annotation pipeline☆58Updated last year
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆52Updated 4 years ago
- ☆53Updated 2 years ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆69Updated 2 months ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆34Updated 8 years ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆56Updated 4 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- Structural Variant Index☆72Updated 4 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago
- An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.☆4Updated last year
- Detection of CNVs (deletion/duplication) in target panel based NGS data☆16Updated last year
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆105Updated 4 years ago
- Burden testing against public controls☆50Updated last year
- Data and information about the Polaris study☆53Updated 5 years ago