Large Language Models for Single-Cell RNA-Seq Annotation
☆26Apr 27, 2026Updated 4 months ago
Alternatives and similar repositories for DeepCellSeek
Users that are interested in DeepCellSeek are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SCIPAC (Single- Cell and bulk data-based Identifier for Phenotype Associated Cells) is a computational method that identifies cells in si…☆16Jun 30, 2024Updated 2 years ago
- scITDG is a tool for identifying time-dependent genes in single-cell sequencing data☆17Nov 24, 2025Updated 9 months ago
- Single-Cell Inference of Class Switch Recombination☆25Jun 19, 2026Updated 2 months ago
- ☆16Apr 23, 2024Updated 2 years ago
- Geometric single cell deconvolution☆18Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- an R package for deep mining gene co-expression networks in multi-trait expression data☆23Jan 23, 2026Updated 7 months ago
- fastCNV R package to detect putative CNVs in single cell and spatial transcriptomics data☆52Jul 9, 2026Updated last month
- The single T cell annotation tool for scRNA-seq data☆29Apr 25, 2025Updated last year
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆17Feb 25, 2019Updated 7 years ago
- Correlation-based approach for identification of endocrine interactions☆13Jan 18, 2022Updated 4 years ago
- ☆45Nov 26, 2025Updated 9 months ago
- Hierarchical Cell Annotation☆32Nov 17, 2024Updated last year
- Difference in Intercellular Communication from scRNA-seq data☆25Oct 14, 2025Updated 10 months ago
- Vignettes for Cardinal3 paper☆11Feb 20, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A collection of easy-to-use custom ggplot2-based functions for data exploration and analysis. Each function handles data preprocessing an…☆27Dec 23, 2025Updated 8 months ago
- a deep generative model for single-cell survival analysis☆26Dec 2, 2025Updated 8 months ago
- Nextflow implementation of scAutoQC pipeline☆12Jul 9, 2026Updated last month
- Read and write TIFF images in R☆11Updated this week
- A permutation-free framework for scalable, robust, and reference-based cell-cell communication analysis in single cell transcriptomics st…☆26May 23, 2026Updated 3 months ago
- ☆11Feb 16, 2021Updated 5 years ago
- ☆25May 16, 2020Updated 6 years ago
- Generate signature matrix from single cell data.☆12Apr 13, 2021Updated 5 years ago
- TE tools for TE RNASeq and smallRNASeq analysis with galaxy☆12Apr 2, 2021Updated 5 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Ordering gene-expression and functional events in single-cell experiments☆33Jul 6, 2026Updated last month
- ☆30Jun 25, 2025Updated last year
- Robust identification of perturbed cell types in single-cell RNA-seq data☆41Nov 10, 2025Updated 9 months ago
- gene regulatory network reconstruction from scRNA-Seq☆25Feb 10, 2022Updated 4 years ago
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆13Jan 27, 2024Updated 2 years ago
- Finding the causality in biological pathways☆14Jul 12, 2023Updated 3 years ago
- Integrate Analysis and Visualization for Bioinformatic Enrichment Analyzer☆83Dec 16, 2023Updated 2 years ago
- plots function for array☆105Jun 13, 2024Updated 2 years ago
- Cromwell output organizer☆13May 18, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A database of useful gene signatures for single-cell analysis☆30May 19, 2025Updated last year
- 使用表达数据，对候选基因进行特征选择，然后构建诊断/预后模型，并使用SHAP分析特征的贡献策划的怒☆18Oct 16, 2025Updated 10 months ago
- Calculating Tumor microenvironment score☆29Jan 20, 2023Updated 3 years ago
- single-cell Contamination Detection and Correction☆18Jan 15, 2025Updated last year
- R package for SIGMA, a clusterability measure for scRNA-seq data☆13Dec 15, 2021Updated 4 years ago
- ☆25Dec 24, 2022Updated 3 years ago
- R package to visualize gene expression data based on weighted kernel density estimation☆116Feb 6, 2026Updated 6 months ago