Alternatives and similar repositories for ssubmit

Users that are interested in ssubmit are comparing it to the libraries listed below

• alignoth / alignoth
  Creating alignment plots from bam files
  ☆65Updated this week
• HudsonAlpha / fmlrc2
  ☆47Updated 2 years ago
• bluenote-1577 / flopp
  flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.
  ☆38Updated last year
• epi2me-labs / fastcat
  Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.
  ☆37Updated 2 months ago
• nanoporetech / pinfish
  Tools to annotate genomes using long read transcriptomics data
  ☆45Updated 4 years ago
• nanoporetech / pipeline-nanopore-denovo-isoforms
  Pipeline for de novo clustering of long transcriptomic reads
  ☆26Updated 3 years ago
• wdecoster / kyber
  ☆21Updated 5 months ago
• goldman-gp-ebi / BOSS-RUNS
  Dynamic, adaptive sampling during nanopore sequencing
  ☆33Updated 3 weeks ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆89Updated this week
• COMBINE-lab / oarfish
  long read RNA-seq quantification
  ☆85Updated last month
• ArcInstitute / xsra
  An efficient CLI to extract sequences from the SRA
  ☆102Updated this week
• Psy-Fer / blue-crab
  lossless nanopore pod5 <=> s/blow5 file conversion
  ☆40Updated last month
• brentp / tiwih
  simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
  ☆44Updated 2 years ago
• GeneDx / pgr-tk
  PGR-TK: Pangenome Research Tool Kit
  ☆99Updated last year
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆75Updated last week
• brentp / vcfexpress
  expressions on VCFs
  ☆85Updated last month
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆34Updated 2 weeks ago
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆97Updated last month
• annalam / seqkit
  Toolkit for manipulating FASTA and SAM files
  ☆18Updated last year
• bwa-mem2 / mm2-fast
  A versatile pairwise aligner for genomic and spliced nucleotide sequences
  ☆54Updated last year
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆62Updated 9 months ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆26Updated last week
• KolmogorovLab / Wakhan
  Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data
  ☆50Updated last month
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆31Updated 4 months ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆39Updated 4 years ago
• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆44Updated 3 years ago
• cytham / nanovar
  Structural variant caller for low-depth long-read sequencing data
  ☆46Updated 2 weeks ago
• lh3 / srf
  SRF: Satellite Repeat Finder
  ☆96Updated last year
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated 11 months ago
• kamimrcht / REINDEER
  REINDEER REad Index for abuNDancE quERy
  ☆58Updated 10 months ago