mbhall88 / ssubmitLinks
Submit slurm sbatch jobs without a script
☆71Updated 3 months ago
Alternatives and similar repositories for ssubmit
Users that are interested in ssubmit are comparing it to the libraries listed below
Sorting:
- Creating alignment plots from bam files☆67Updated last week
- expressions on VCFs☆86Updated 7 months ago
- vembrane filters VCF records using python expressions☆66Updated last month
- an API for intersections of genomic data☆74Updated this week
- Fast sequencing data quality metrics☆31Updated 2 months ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- ☆47Updated 2 years ago
- gia: Genomic Interval Arithmetic☆64Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆46Updated 2 months ago
- ☆21Updated 10 months ago
- a lexicographically-based GTF/GFF sorter☆35Updated 6 months ago
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆64Updated 3 weeks ago
- bioinformatics toolkit in rust☆93Updated last month
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆48Updated 3 weeks ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Grep for FASTQ files☆102Updated 7 months ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last week
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Updated 2 years ago
- Structural variant caller for low-depth long-read sequencing data☆45Updated last month
- Easy genomic regions for short-read variant calling☆45Updated 2 months ago
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆41Updated 3 months ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 2 weeks ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Tools and software library developed by the ONT Applications group☆64Updated 4 years ago
- fastest GTF/GFF-to-BED converter chilling around☆28Updated last month
- An efficient CLI to extract sequences from the SRA☆117Updated this week
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 2 months ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆45Updated 3 weeks ago