mbhall88 / ssubmitLinks
Submit slurm sbatch jobs without a script
☆73Updated 5 months ago
Alternatives and similar repositories for ssubmit
Users that are interested in ssubmit are comparing it to the libraries listed below
Sorting:
- expressions on VCFs☆89Updated 9 months ago
- Creating alignment plots from bam files☆104Updated last week
- Grep for FASTQ files☆103Updated last month
- bioinformatics toolkit in rust☆93Updated 4 months ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 2 months ago
- CRyPTIC data processing pipelines☆34Updated last year
- vembrane filters VCF records using python expressions☆68Updated 3 weeks ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last month
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- a lexicographically-based GTF/GFF sorter☆37Updated 9 months ago
- ☆21Updated last year
- gia: Genomic Interval Arithmetic☆66Updated last year
- Fast sequencing data quality metrics☆31Updated 4 months ago
- ☆49Updated 2 years ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆51Updated 2 months ago
- Snakemake workflow management system and CLI generation tool☆63Updated 3 months ago
- Pan-Genomic Matching Statistics☆55Updated last year
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆22Updated 2 months ago
- Remove human reads from a sequencing run☆47Updated last month
- A method of assessing sequence complexity based on kmer frequencies☆33Updated 7 years ago
- Params validation plugin for Nextflow pipelines☆48Updated last year
- implicit pangenome graph☆86Updated last week
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 6 months ago
- A versatile toolkit for k-mers with taxonomic information☆82Updated 5 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 4 years ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆24Updated this week
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆38Updated 5 months ago
- 🧬 High-performance VCF file parser and reformatter with VEP annotation support. Converts complex VCF files to analyzable TSV format …☆44Updated 5 months ago
- an API for intersections of genomic data☆141Updated last month