Alternatives and similar repositories for EMU:

Users that are interested in EMU are comparing it to the libraries listed below

• cleterrier / Utils
  ☆10Updated last month
• aherbert / gdsc-smlm
  GDSC Single Molecule Light Microscopy ImageJ Plugins
  ☆15Updated last month
• AndrewGYork / high_na_single_objective_lightsheet
  Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…
  ☆22Updated 6 months ago
• micro-manager / futureMMCore
  Place to discuss the future design of a universal microscope hardware interface
  ☆15Updated 3 years ago
• saalfeldlab / n5-ij
  ImageJ convenience layer for N5
  ☆16Updated last month
• PRNicovich / 3D-Printed-Optics-Lab-Parts
  Various parts made for fluorescence microscopy + optics work
  ☆16Updated 5 years ago
• BiAPoL / imagej-macro-cheat-sheet
  ☆19Updated 3 years ago
• napari-storm / napari-storm
  ☆12Updated 2 months ago
• cmongis / psfj
  PSFj - Know your microscope fluorescence
  ☆21Updated 4 years ago
• tlambert03 / imarispy
  Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer
  ☆12Updated 3 years ago
• UU-cellbiology / ComDet
  ImageJ plugin detecting and colocalizing particles of given size (vesicles, dots, etc on biological microscopy images)
  ☆14Updated last year
• QI2lab / OPM
  Control, reconstruction, and analysis code for oblique plane microscopy.
  ☆21Updated last month
• nvladimus / npy2bdv
  Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
  ☆35Updated 4 months ago
• BIOP / ijp-LaRoMe
  some useful function to get Label from ROIs and vice versa , and more!
  ☆12Updated last year
• BIOP / EasyXT-FIJI
  Commands and Classes for interfacing between Imaris and Fiji
  ☆12Updated 3 months ago
• ries-lab / RiesPieces
  Recipes for open microscopy
  ☆12Updated 4 years ago
• pymmcore-plus / pymmcore-widgets
  A set of Qt-based widgets onto the pymmcore-plus model
  ☆12Updated last week
• mesoSPIM / mesoSPIM-control
  Image acquisition software for mesoSPIM light-sheet microscopes.
  ☆37Updated last month
• henrypinkard / Pygellan
  [DEPREACATED] Python interface for data-driven microscopy with Micro-manager/Micro-Magellan
  ☆14Updated 4 years ago
• BIOP / coLoc
  A Board Game to teach co-localization analysis
  ☆12Updated 2 months ago
• tlambert03 / pycudadecon
  Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy
  ☆60Updated last week
• lacan / microscopy-icons
  Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/
  ☆11Updated last year
• haesleinhuepf / napari-plot-profile
  ☆17Updated 2 years ago
• esgomezm / microscopy-dl-suite-tf
  Deep Learning segmentation suite designed for 2D microscopy image segmentation
  ☆9Updated 3 years ago
• MicroscPSF / MicroscPSF-Py
  Fast and Accurate 3D PSF Computation for Fluorescence Microscopy
  ☆38Updated 2 months ago
• tlambert03 / LLSpy
  Lattice light-sheet post-processing utility.
  ☆27Updated last week
• kwolbachia / Visualization_toolset
  Imagej toolset to ease hyperstacks visualization and handling
  ☆22Updated 3 months ago
• UU-cellbiology / ZstackDepthColorCode
  Z-stack Depth Colorcode ImageJ FIJI plugin
  ☆23Updated 3 years ago
• SebastienTs / LOBSTER
  Little OBjects Segmentation and Tracking EnviRonment
  ☆9Updated 4 years ago