DeepVariant-on-Spark is a germline short variant calling pipeline that runs Google DeepVariant on Apache Spark at scale.
☆12Jul 4, 2026Updated 3 weeks ago
Alternatives and similar repositories for deepvariant-on-spark
Users that are interested in deepvariant-on-spark are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 4 years ago
- 歡迎觀看我們的YouTube頻道，一起用Python刷LeetCode找工作！☆11Sep 1, 2020Updated 5 years ago
- A complete Snakemake pipeline for detecting allele specific expression in RNA-seq☆10Jul 10, 2021Updated 5 years ago
- Bayesian-based fetal genotyping using maternal cell-free DNA and parental sequencing data.☆14Jun 5, 2019Updated 7 years ago
- 以 Airflow 作為核心的財報分析系統。☆11Feb 26, 2022Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Modeling the genomic regulatory codes of fly, mouse, worm, and fish with deep learning☆17Apr 6, 2021Updated 5 years ago
- Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.☆42Feb 13, 2026Updated 5 months ago
- Connectors for the Zeek NetControl framework☆19Feb 4, 2025Updated last year
- Wagtail website for Project TIER☆13Jul 11, 2024Updated 2 years ago
- OpenSCAD primitive solids with round edges and corners. Provides a debug mode to save resources while modeling☆21Feb 4, 2025Updated last year
- Ultrafast sequence typing and gene detection from NGS raw reads☆20Apr 15, 2021Updated 5 years ago
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24May 29, 2026Updated 2 months ago
- ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data☆25Oct 30, 2025Updated 8 months ago
- Quantum Computing Unity allows to make a call to a areal quantum computer from within unity☆11Apr 28, 2021Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Chromax is a breeding simulator based on JAX.☆10Jun 6, 2025Updated last year
- Define Netlify sites as part of an AWS Cloudformation stack.☆11Jun 5, 2021Updated 5 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- Biotechnology protocols improved with Artificial Intelligence for the MIT biotechnology tournament iGem 2019. Check out our website!☆12Dec 12, 2019Updated 6 years ago
- De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data☆21Oct 11, 2022Updated 3 years ago
- ☆20Nov 30, 2017Updated 8 years ago
- Tools to work with 23andMe and AncestryDNA raw files☆12Aug 5, 2017Updated 8 years ago
- Collection of bioinformatics-related WDL modules and pipelines☆21Updated this week
- Applying LSTM Seq2Seq model on the Covid-19 dataset.☆10Nov 18, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- CoRA Docs☆37May 18, 2026Updated 2 months ago
- Notebooks for Alea GPU☆12Feb 16, 2017Updated 9 years ago
- Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…☆12May 8, 2024Updated 2 years ago
- GC Skew Test for Bacterial Genomes☆32Sep 29, 2022Updated 3 years ago
- Our development site with Wagtail☆14Nov 15, 2023Updated 2 years ago
- Jupyter Notebook to demonstrate the use of Neural Networks for Transcription Factor Binding Site Prediction☆13Jun 20, 2017Updated 9 years ago
- Genome-wide association studies identify genetic variations associated with a target disease or trait. Researchers and clinicians can use…☆11Apr 12, 2024Updated 2 years ago
- 🔬 R package: Analysis of Large Affymetrix Microarray Data Sets☆12Dec 14, 2025Updated 7 months ago
- ☆23May 8, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A C++14 library for NGS data formats☆39Aug 5, 2019Updated 6 years ago
- This is a simple demo for integrating Authing in AWS China region to protect API Gateway REST API and other AWS resources such as IoT, Po…☆12Oct 12, 2024Updated last year
- Python library & CLI to create, view and edit PFB files☆14Updated this week
- 🔥 DNA微分催化与肽计算， 元基花计算，进化计算，遗传计算，智慧计算，索引计算，元基编码，肽展公式，大数据计算分析☆17Nov 12, 2025Updated 8 months ago
- Search text files for DNA sequences and their reverse complements☆13Mar 2, 2017Updated 9 years ago
- Predicting Future Influenza Virus Sequences with Machine Learning☆32Feb 11, 2018Updated 8 years ago
- Pipeline for universal design of target-enrichment probes from various sources of genomic data.☆29Oct 18, 2020Updated 5 years ago