Alternatives and similar repositories for inSPIRE:

Users that are interested in inSPIRE are comparing it to the libraries listed below

• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆42Updated this week
• compomics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆42Updated last month
• compomics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆63Updated last week
• Nesvilab / PTM-Shepherd
  A tool for summarizing open search results
  ☆16Updated this week
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆46Updated last week
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆35Updated last week
• MannLabs / alphapeptdeep
  Deep learning framework for proteomics
  ☆122Updated last week
• MannLabs / alphamap
  An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
  ☆82Updated last month
• MannLabs / alphadia
  modular & open DIA search
  ☆67Updated this week
• MannLabs / alphatims
  An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…
  ☆87Updated last month
• Nesvilab / MSFragger
  Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
  ☆116Updated 10 months ago
• wfondrie / depthcharge
  A deep learning toolkit for mass spectrometry
  ☆76Updated 9 months ago
• MannLabs / directlfq
  Fast and accurate label-free quantification for small and very large numbers of proteomes
  ☆54Updated last week
• theGreatHerrLebert / sagepy
  A python interface to the SAGE search engine for mass spectrometry proteomics
  ☆13Updated 2 weeks ago
• ProteomicsML / ProteomicsML
  Community-curated tutorials and datasets for ML in proteomics
  ☆52Updated 3 weeks ago
• statisticalbiotechnology / maracluster
  Matthew The's implementation of MaRaCluster
  ☆11Updated 2 years ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆43Updated last month
• bzhanglab / deep_learning_in_proteomics
  A list of tools on proteomics using deep learning
  ☆94Updated 11 months ago
• mafreitas / tdf2mzml
  ☆26Updated last year
• MannLabs / alphaviz
  AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…
  ☆32Updated last week
• abdrakhimov1 / Biosaur
  ☆14Updated 2 years ago
• Noble-Lab / casanovo
  De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model
  ☆136Updated this week
• compomics / ms2rescore
  Modular and user-friendly platform for AI-assisted rescoring of peptide identifications
  ☆57Updated last week
• MannLabs / alpharaw
  An open-source Python package to unify raw MS data accession and storage.
  ☆23Updated last week
• compomics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆27Updated last week
• michalsta / opentims
  Open-source C++ and Python module for opening binary timsTOF data files.
  ☆48Updated last month
• thermofisherlsms / iapi
  Instrument Application Programming Interface
  ☆46Updated 2 months ago
• snijderlab / annotator
  A simple tool to help you manually discover the depths of your (complex) spectra, one spectrum at a time.
  ☆26Updated last week
• gtluu / timsconvert
  ☆37Updated last month
• tvpham / iq
  An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
  ☆30Updated last month