Python Package for the downstream analysis of mass-spectrometry-based proteomics data
☆86Nov 21, 2025Updated 4 months ago
Alternatives and similar repositories for alphapeptstats
Users that are interested in alphapeptstats are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is a collection of minimal code to visualize various aspects of proteomics data.☆83Jan 6, 2022Updated 4 years ago
- A modular, python-based framework for mass spectrometry. Powered by nbdev.☆187Apr 19, 2024Updated last year
- Deep learning framework for proteomics☆149Updated this week
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆92Nov 17, 2025Updated 4 months ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆94Mar 18, 2026Updated 3 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Infrastructure of AlphaX ecosystem☆55Feb 27, 2026Updated last month
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆61Mar 19, 2026Updated 3 weeks ago
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆37Mar 18, 2026Updated 3 weeks ago
- 🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data☆38Jun 10, 2024Updated last year
- Spectral library searching using approximate nearest neighbor techniques.☆49Feb 11, 2026Updated 2 months ago
- An open-source Python package for dia-PASEF methods with Automated Isolation Design (py_diAID) from the Mann Labs at the Max Planck Inst…☆28Mar 19, 2026Updated 3 weeks ago
- modular & open DIA search☆106Apr 2, 2026Updated last week
- Collisional cross-section prediction for modified and multiconformational peptides☆13Updated this week
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆49Updated this week
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆436Feb 5, 2026Updated 2 months ago
- A list of tools on proteomics using deep learning☆107May 5, 2024Updated last year
- pDeepXL: MS/MS spectrum prediction for cross-linked peptide pairs by deep learning☆12Feb 8, 2021Updated 5 years ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆64Updated this week
- Absolute quantification package based on quantms.io☆16Sep 25, 2025Updated 6 months ago
- Open-source C++ and Python module for opening binary timsTOF data files.☆50Mar 28, 2026Updated 2 weeks ago
- MS/MS prediction for peptides☆24Dec 18, 2020Updated 5 years ago
- DeepLC: Retention time prediction for peptides carrying any modification.☆75Apr 2, 2026Updated last week
- ☆28May 20, 2025Updated 10 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆23Updated this week
- Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)☆24Nov 11, 2024Updated last year
- ☆22Jun 28, 2021Updated 4 years ago
- A collection of available Python tools for Proteomics analysis☆67Jan 31, 2026Updated 2 months ago
- An open-source Python package to unify raw MS data accession and storage.☆31Updated this week
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆21Apr 7, 2026Updated last week
- Proteomics search & quantification so fast that it feels like magic☆287Mar 31, 2026Updated 2 weeks ago
- ☆20Apr 15, 2025Updated 11 months ago
- Read, create and write cutting data for the Leica LMD6 & LMD7 microscope. Build reproducible workflows to calibrate, import SVG files and…☆15Jan 17, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆13Mar 25, 2026Updated 2 weeks ago
- Rescoring and spectral library generation pipeline for proteomics.☆55Updated this week
- R package - MSstats☆96Apr 7, 2026Updated last week
- Processing and analysis of proteomics data☆17Mar 27, 2026Updated 2 weeks ago
- This project is created by the Hao Lab at the Department of Chemistry & Biochemistry, University of Maryland, College Park, MD. This proj…☆33Nov 24, 2024Updated last year
- ☆11May 1, 2024Updated last year
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆14Aug 25, 2022Updated 3 years ago