MannLabs / alphapeptstatsLinks
Python Package for the downstream analysis of mass-spectrometry-based proteomics data
☆70Updated last week
Alternatives and similar repositories for alphapeptstats
Users that are interested in alphapeptstats are comparing it to the libraries listed below
Sorting:
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆83Updated 4 months ago
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆32Updated 3 months ago
- Infrastructure of AlphaX ecosystem☆40Updated this week
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆88Updated last month
- Rescoring and spectral library generation pipeline for proteomics.☆46Updated last week
- Deep learning framework for proteomics☆129Updated 3 weeks ago
- modular & open DIA search☆73Updated this week
- This is a collection of minimal code to visualize various aspects of proteomics data.☆80Updated 3 years ago
- A modular, python-based framework for mass spectrometry. Powered by nbdev.☆177Updated last year
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆132Updated 2 weeks ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆58Updated 3 months ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆68Updated 3 weeks ago
- A collection of available Python tools for Proteomics analysis☆58Updated 6 years ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆120Updated last month
- Democratizing ML in proteomics☆39Updated last week
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆46Updated this week
- ☆38Updated 4 months ago
- Community-curated tutorials and datasets for ML in proteomics☆54Updated 4 months ago
- A list of tools on proteomics using deep learning☆97Updated last year
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆93Updated 3 months ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆28Updated this week
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆65Updated 2 years ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆31Updated 5 months ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆44Updated 4 months ago
- Python framework for Deep Learning in Proteomics☆28Updated 2 weeks ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆51Updated last week
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆59Updated last month
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆25Updated 8 months ago
- Python package for efficient mass spectrometry data processing and visualization☆154Updated 4 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆52Updated last week