MannLabs / alphapeptstatsLinks
Python Package for the downstream analysis of mass-spectrometry-based proteomics data
☆73Updated this week
Alternatives and similar repositories for alphapeptstats
Users that are interested in alphapeptstats are comparing it to the libraries listed below
Sorting:
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆85Updated last week
- A collection of available Python tools for Proteomics analysis☆59Updated 6 years ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆89Updated last week
- Deep learning framework for proteomics☆131Updated last week
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆32Updated 4 months ago
- A list of tools on proteomics using deep learning☆103Updated last year
- This is a collection of minimal code to visualize various aspects of proteomics data.☆81Updated 3 years ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆70Updated last month
- modular & open DIA search☆74Updated this week
- Infrastructure of AlphaX ecosystem☆41Updated this week
- Community-curated tutorials and datasets for ML in proteomics☆55Updated 4 months ago
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆138Updated last month
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆59Updated last week
- Rescoring and spectral library generation pipeline for proteomics.☆47Updated last week
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆121Updated last month
- A modular, python-based framework for mass spectrometry. Powered by nbdev.☆178Updated last year
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆65Updated 2 years ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆95Updated last week
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆47Updated this week
- Democratizing ML in proteomics☆43Updated last week
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆45Updated 5 months ago
- ☆39Updated 5 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆56Updated last week
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆29Updated 3 weeks ago
- ☆20Updated 6 months ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆53Updated this week
- Python framework for Deep Learning in Proteomics☆29Updated 2 weeks ago
- Instrument Application Programming Interface☆49Updated 6 months ago
- Open-source C++ and Python module for opening binary timsTOF data files.☆49Updated 2 months ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆60Updated 2 months ago