MannLabs / alphapeptstatsLinks
Python Package for the downstream analysis of mass-spectrometry-based proteomics data
☆77Updated 2 weeks ago
Alternatives and similar repositories for alphapeptstats
Users that are interested in alphapeptstats are comparing it to the libraries listed below
Sorting:
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆89Updated 3 weeks ago
- A collection of available Python tools for Proteomics analysis☆65Updated 6 years ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆82Updated 3 years ago
- Community-curated tutorials and datasets for ML in proteomics☆55Updated last month
- modular & open DIA search☆93Updated this week
- Deep learning framework for proteomics☆137Updated 3 weeks ago
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆35Updated 7 months ago
- Rescoring and spectral library generation pipeline for proteomics.☆52Updated last month
- Infrastructure of AlphaX ecosystem☆50Updated this week
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆92Updated this week
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆122Updated 5 months ago
- A list of tools on proteomics using deep learning☆106Updated last year
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆60Updated 3 weeks ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆49Updated this week
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆146Updated last week
- Python framework for Deep Learning in Proteomics☆33Updated this week
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆72Updated 2 months ago
- Democratizing ML in proteomics☆50Updated 3 weeks ago
- A modular, python-based framework for mass spectrometry. Powered by nbdev.☆181Updated last year
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆47Updated 8 months ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆98Updated 2 months ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆53Updated last week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆64Updated this week
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆66Updated 2 years ago
- ☆20Updated 9 months ago
- ☆44Updated 8 months ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆62Updated this week
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆32Updated last month
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆29Updated last month
- Instrument Application Programming Interface☆51Updated 2 months ago