Python Package for the downstream analysis of mass-spectrometry-based proteomics data
☆90Nov 21, 2025Updated 11 months ago
Alternatives and similar repositories for alphapeptstats
Users that are interested in alphapeptstats are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An open-source Python package for accurate and sensitive peptide and protein quantification.☆22Oct 1, 2026Updated last month
- A modular, python-based framework for mass spectrometry. Powered by nbdev.☆193Apr 19, 2024Updated 2 years ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆87Jan 6, 2022Updated 4 years ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆64Jul 15, 2026Updated 3 months ago
- Infrastructure of AlphaX ecosystem☆60Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- modular & open DIA search☆119Updated this week
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆95Nov 17, 2025Updated 11 months ago
- Deep learning framework for proteomics☆161Aug 31, 2026Updated 2 months ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆98Jun 3, 2026Updated 4 months ago
- 🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data☆39Jun 10, 2024Updated 2 years ago
- ☆33Sep 24, 2026Updated last month
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆41Jun 3, 2026Updated 4 months ago
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆26Oct 15, 2026Updated 2 weeks ago
- Collisional cross-section prediction for modified and multiconformational peptides☆15Aug 26, 2026Updated 2 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A list of tools on proteomics using deep learning☆111May 14, 2026Updated 5 months ago
- Spectral library searching using approximate nearest neighbor techniques.☆52Feb 11, 2026Updated 8 months ago
- Proteomics search & quantification so fast that it feels like magic☆317Oct 22, 2026Updated last week
- An open-source Python package for dia-PASEF methods with Automated Isolation Design (py_diAID) from the Mann Labs at the Max Planck Inst…☆31Mar 19, 2026Updated 7 months ago
- R package - MSstats☆103Oct 4, 2026Updated 3 weeks ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆32Jul 16, 2026Updated 3 months ago
- MS/MS prediction for peptides☆25Dec 18, 2020Updated 5 years ago
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆493Sep 16, 2026Updated last month
- ☆21Feb 14, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆10Mar 14, 2025Updated last year
- Absolute quantification package based on quantms.io☆16Sep 16, 2026Updated last month
- Processing and analysis of proteomics data☆18Updated this week
- ☆39Oct 23, 2026Updated last week
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆51Jul 13, 2026Updated 3 months ago
- Read/write functions to and from spatialdata for Deep Visual Proteomics☆22Oct 14, 2026Updated 2 weeks ago
- DeepLC: Retention time prediction for peptides carrying any modification.☆81Oct 25, 2026Updated last week
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆60Updated this week
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆15Aug 25, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆67Oct 9, 2026Updated 3 weeks ago
- Democratizing ML in proteomics☆58Updated this week
- A collection of available Python tools for Proteomics analysis☆70Jan 31, 2026Updated 9 months ago
- An open-source Python package to unify raw MS data accession and storage.☆36Aug 31, 2026Updated 2 months ago
- Rescoring and spectral library generation pipeline for proteomics.☆62Updated this week
- ☆11Aug 21, 2026Updated 2 months ago
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆34Mar 27, 2026Updated 7 months ago