Roestlab / PythonProteomics
A collection of available Python tools for Proteomics analysis
☆55Updated 5 years ago
Alternatives and similar repositories for PythonProteomics:
Users that are interested in PythonProteomics are comparing it to the libraries listed below
- A list of tools on proteomics using deep learning☆92Updated 10 months ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆66Updated this week
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆81Updated this week
- Community-curated tutorials and datasets for ML in proteomics☆50Updated 4 months ago
- Deep learning framework for proteomics☆121Updated this week
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆39Updated last year
- This is a collection of minimal code to visualize various aspects of proteomics data.☆71Updated 3 years ago
- ☆59Updated 10 months ago
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆35Updated 4 months ago
- modular & open DIA search☆65Updated this week
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆61Updated 3 weeks ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆47Updated last week
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆112Updated 9 months ago
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆32Updated last month
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆80Updated 5 months ago
- An introductory course to Python by the Center of Health Data Science (University of Copenhagen)☆17Updated this week
- Infrastructure of AlphaX ecosystem☆37Updated this week
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆124Updated this week
- 🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data☆33Updated 9 months ago
- MS/MS prediction for peptides☆22Updated 4 years ago
- Python package for investigating the structural context of PTMs☆28Updated 2 months ago
- Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.☆41Updated 2 years ago
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆24Updated 3 months ago
- DeepMass is a suite of tools to enable mass spectrometry data analysis using modern machine learning techniques.☆50Updated 3 years ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆78Updated 11 months ago
- Rescoring and spectral library generation pipeline for proteomics.☆39Updated last week
- Democratizing ML in proteomics☆34Updated this week
- ☆13Updated 5 months ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆115Updated this week
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆64Updated last year