bittremieux-lab / spectrum_utilsLinks
Python package for efficient mass spectrometry data processing and visualization
☆156Updated 5 months ago
Alternatives and similar repositories for spectrum_utils
Users that are interested in spectrum_utils are comparing it to the libraries listed below
Sorting:
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆139Updated last month
- Community-curated tutorials and datasets for ML in proteomics☆55Updated 2 weeks ago
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆223Updated 2 weeks ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆90Updated 3 weeks ago
- Deep learning framework for proteomics☆131Updated 2 weeks ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆121Updated 2 months ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆65Updated 2 years ago
- Open-source C++ and Python module for opening binary timsTOF data files.☆49Updated 3 months ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆86Updated 3 weeks ago
- Thermo MSFileReader Python bindings☆69Updated 4 years ago
- Democratizing ML in proteomics☆43Updated 3 weeks ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆48Updated 6 months ago
- ☆39Updated 6 months ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆70Updated 2 weeks ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆45Updated 6 months ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆95Updated last week
- Rescoring and spectral library generation pipeline for proteomics.☆48Updated 2 weeks ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆73Updated 2 weeks ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆61Updated 3 months ago
- A list of tools on proteomics using deep learning☆105Updated last year
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆48Updated 2 weeks ago
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆89Updated 2 years ago
- Instrument Application Programming Interface☆51Updated this week
- A collection of available Python tools for Proteomics analysis☆60Updated 6 years ago
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆154Updated last month
- A deep learning toolkit for mass spectrometry☆82Updated last year
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆118Updated last week
- ☆62Updated 6 months ago
- asari, metabolomics data preprocessing☆53Updated last month
- A modular, python-based framework for mass spectrometry. Powered by nbdev.☆179Updated last year