jendelman / StageWise
two-stage analysis of multi-environment trials for genomic selection and GWAS
☆22Updated 6 months ago
Alternatives and similar repositories for StageWise:
Users that are interested in StageWise are comparing it to the libraries listed below
- ☆34Updated 2 years ago
- https://filippob.github.io/introduction_to_gwas/☆19Updated 7 months ago
- An R script to generate plots for ADMIXTURE runs, for multiple K values.☆17Updated last year
- lme4 for Genomic Selection☆16Updated 3 years ago
- Comprehensive, detailed and interactive plots for STRUCTURE and ADMIXTURE population analysis☆19Updated 2 months ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆41Updated 5 years ago
- R package for random-effect multiple QTL mapping in autopolyploids☆9Updated 3 years ago
- ☆29Updated this week
- ☆24Updated 4 years ago
- GWAS software that can handle autopolyploids☆28Updated 3 months ago
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆23Updated 2 years ago
- G2P is an integrated genomic selection (GS) package for predicting phenotypes from genotypes. It includes 15 GS algorithms and 13 evaluat…☆12Updated 7 years ago
- ☆16Updated 5 years ago
- Software for ancestry estimation in unrelated individuals☆16Updated this week
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆34Updated last month
- Added functions for Echidna in R☆11Updated last year
- Tutorials for bioinformatics and data analysis related to landscape genomics☆26Updated 6 years ago
- ☆43Updated last year
- Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…☆36Updated last year
- Perform GWAS using the FarmCPU model.☆23Updated last month
- Simulation of Pleiotropic, Linked and Epistatic Phenotypes☆12Updated 11 months ago
- Genetic maps in autopolyploids☆27Updated 10 months ago
- SambaR: Snp datA Management and Basic Analyses in R☆27Updated 3 weeks ago
- A comprehensive database for efficient retrieve and analysis of SNPs among 1210 maize lines☆13Updated 2 years ago
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆30Updated last year
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆39Updated 4 months ago
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆22Updated last month
- ☆16Updated 4 years ago
- Build haplotye and generate figures☆18Updated 3 years ago
- blupADC:An useful tool for animal and plant breeding☆24Updated 2 months ago