jendelman / StageWiseLinks
two-stage analysis of multi-environment trials for genomic selection and GWAS
☆27Updated 4 months ago
Alternatives and similar repositories for StageWise
Users that are interested in StageWise are comparing it to the libraries listed below
Sorting:
- lme4 for Genomic Selection☆18Updated 4 years ago
- ☆25Updated 4 years ago
- ☆35Updated 3 years ago
- Added functions for Echidna in R☆11Updated 2 years ago
- https://filippob.github.io/introduction_to_gwas/☆20Updated this week
- Genetic maps in autopolyploids☆29Updated last month
- G2P is an integrated genomic selection (GS) package for predicting phenotypes from genotypes. It includes 15 GS algorithms and 13 evaluat…☆13Updated 7 years ago
- R package for random-effect multiple QTL mapping in autopolyploids☆9Updated 3 years ago
- ☆16Updated 6 years ago
- Using genome-wide markers for polyploid breeding☆11Updated 5 months ago
- GWAS software that can handle autopolyploids☆28Updated 8 months ago
- Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝☆31Updated 3 months ago
- Heritability in plant breeding - R and SAS code examples☆33Updated 4 years ago
- R functions related to pedigrees☆12Updated 11 months ago
- Simulation of Pleiotropic, Linked and Epistatic Phenotypes☆13Updated last year
- 2024 BreedWheat Genomic Selection pipeline☆13Updated last year
- This is a read-only mirror of the CRAN R package repository. sommer — Solving Mixed Model Equations in R. Homepage: https://github.com/…☆16Updated last month
- Perform GWAS using the FarmCPU model.☆23Updated 6 months ago
- Suit of R-scripts to perform landscape genomic analyses☆14Updated 5 years ago
- QTL analysis in diallel populations☆12Updated last year
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆41Updated 9 months ago
- ☆30Updated 3 weeks ago
- See https://biometris.github.io/statgenGxE for a full description☆11Updated this week
- An R package to compute relationship matrices for diploid and autotetraploid species☆19Updated last year
- Plant breeding simulations with AlphaSimR☆19Updated 5 months ago
- Shiny apps for teaching Population Genetics☆65Updated 2 years ago
- Comprehensive, detailed and interactive plots for STRUCTURE and ADMIXTURE population analysis☆22Updated 7 months ago
- blupADC:An useful tool for animal and plant breeding☆27Updated 7 months ago
- A comprehensive database for efficient retrieve and analysis of SNPs among 1210 maize lines☆13Updated 2 years ago
- Tutorials for bioinformatics and data analysis related to landscape genomics☆28Updated 6 years ago