Alternatives and similar repositories for StageWise:

Users that are interested in StageWise are comparing it to the libraries listed below

• whussain2 / Analysis-pipeline
  ☆34Updated 3 years ago
• MarcooLopez / Genomic-Selection
  ☆24Updated 4 years ago
• perpdgo / lme4GS
  lme4 for Genomic Selection
  ☆17Updated 3 years ago
• mighster / BLUPs_Heritability
  ☆16Updated 5 years ago
• yzhlinscau / AFEchidna
  Added functions for Echidna in R
  ☆11Updated 2 years ago
• guilherme-pereira / QTLpoly
  R package for random-effect multiple QTL mapping in autopolyploids
  ☆9Updated 3 years ago
• jendelman / diaQTL
  QTL analysis in diallel populations
  ☆12Updated last year
• cma2015 / G2P
  G2P is an integrated genomic selection (GS) package for predicting phenotypes from genotypes. It includes 15 GS algorithms and 13 evaluat…
  ☆12Updated 7 years ago
• filippob / introduction_to_gwas
  https://filippob.github.io/introduction_to_gwas/
  ☆20Updated 9 months ago
• mmollina / MAPpoly
  Genetic maps in autopolyploids
  ☆29Updated last month
• nicocriscuolo / StructuRly
  Comprehensive, detailed and interactive plots for STRUCTURE and ADMIXTURE population analysis
  ☆20Updated 5 months ago
• hemstrow / snpR
  ☆30Updated last week
• lvclark / polyRAD
  Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝
  ☆30Updated last month
• jendelman / GWASpoly
  GWAS software that can handle autopolyploids
  ☆28Updated 6 months ago
• samuelbfernandes / simplePHENOTYPES
  Simulation of Pleiotropic, Linked and Epistatic Phenotypes
  ☆13Updated last year
• amkusmec / FarmCPUpp
  Perform GWAS using the FarmCPU model.
  ☆23Updated 4 months ago
• prmunoz / AGHmatrix
  An R package to compute relationship matrices for diploid and autotetraploid species
  ☆18Updated last year
• PaulSchmidtGit / Heritability
  Heritability in plant breeding - R and SAS code examples
  ☆33Updated 4 years ago
• cran / sommer
   This is a read-only mirror of the CRAN R package repository. sommer — Solving Mixed Model Equations in R. Homepage: https://github.com/…
  ☆16Updated 3 weeks ago
• TXiang-lab / blupADC
  blupADC:An useful tool for animal and plant breeding
  ☆27Updated 5 months ago
• YaoLab-Bioinfo / MaizeSNPDB
  A comprehensive database for efficient retrieve and analysis of SNPs among 1210 maize lines
  ☆13Updated 2 years ago
• pgugger / LandscapeGenomics
  Tutorials for bioinformatics and data analysis related to landscape genomics
  ☆27Updated 6 years ago
• HighlanderLab / jbancic_alphasimr_plants
  Plant breeding simulations with AlphaSimR
  ☆18Updated 3 months ago
• laurabenestan / RDA_outlier
  Redundancy Analysis allowing to both estimate the percent of genomic variation explained by each variable as well as to detect the putati…
  ☆8Updated 5 years ago
• rojaff / LanGen_pipeline
  Suit of R-scripts to perform landscape genomic analyses
  ☆13Updated 4 years ago
• Tom-Jenkins / mapmixture
  R package and web app for spatial visualisation of admixture on a projected map
  ☆44Updated 3 weeks ago
• Rpedigree / pedigreeTools
  R functions related to pedigrees
  ☆11Updated 9 months ago
• dcgerard / updog
  Flexible Genotyping of Polyploids using Next Generation Sequencing Data
  ☆29Updated 6 months ago
• vangiangtran / BWGS
  2024 BreedWheat Genomic Selection pipeline
  ☆12Updated last year
• Menggg / BLINK
  BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions
  ☆35Updated last month