two-stage analysis of multi-environment trials for genomic selection and GWAS
☆29Dec 14, 2025Updated 2 months ago
Alternatives and similar repositories for StageWise
Users that are interested in StageWise are comparing it to the libraries listed below
Sorting:
- 2024 BreedWheat Genomic Selection pipeline☆13Jan 3, 2024Updated 2 years ago
- lme4 for Genomic Selection☆18Jan 26, 2026Updated last month
- Provide tools for collecting environmental data from GIS-based platforms,enabling environmental characterization studies, providing envir…☆32Mar 27, 2025Updated 11 months ago
- An R package to compute relationship matrices for diploid and autotetraploid species☆22Dec 12, 2025Updated 2 months ago
- Added functions for Echidna in R☆11Apr 14, 2023Updated 2 years ago
- ☆37Feb 5, 2022Updated 4 years ago
- QTL analysis in diallel populations☆12Dec 2, 2025Updated 3 months ago
- ☆24Oct 16, 2023Updated 2 years ago
- G2P is an integrated genomic selection (GS) package for predicting phenotypes from genotypes. It includes 15 GS algorithms and 13 evaluat…☆17Sep 27, 2017Updated 8 years ago
- Yield Prediction Using Deep Learning on Multivariate Time Series Data☆18May 22, 2021Updated 4 years ago
- ☆16Jun 14, 2019Updated 6 years ago
- https://filippob.github.io/introduction_to_gwas/☆22Jul 2, 2025Updated 8 months ago
- [IJCAI 2024] An Embarrassingly Simple Approach to Enhance Transformer Performance in Genomic Selection for Crop Breeding☆18Dec 12, 2024Updated last year
- R front-end for TASSEL 5☆33Feb 26, 2026Updated last week
- ☆114Oct 3, 2025Updated 5 months ago
- R package for fitting high-dimensional multivariate linear mixed effect models☆37Oct 20, 2025Updated 4 months ago
- ☆13Feb 16, 2026Updated 2 weeks ago
- ☆28Nov 22, 2020Updated 5 years ago
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆24Sep 26, 2025Updated 5 months ago
- Perform GWAS using the FarmCPU model.☆24Dec 14, 2024Updated last year
- ☆13Mar 22, 2022Updated 3 years ago
- ☆15Jul 19, 2025Updated 7 months ago
- ☆18Oct 5, 2023Updated 2 years ago
- Discovery of genetic variants with shared effect across multiple phenotypes from GWAS summary statistics☆14Oct 27, 2023Updated 2 years ago
- GWAS software that can handle autopolyploids☆32Oct 14, 2025Updated 4 months ago
- DeepGS is a R package for predicting phenotypes from genotypes using deep learning techniques.☆56Dec 3, 2021Updated 4 years ago
- Bison-Fly is the NDSU Spring Wheat UAV Pipeline developed in partnership with Drone2Phenome UAV community (D2P). In this pipeline we are …☆31Aug 12, 2024Updated last year
- See https://biometris.github.io/statgenGxE for a full description☆12Nov 12, 2025Updated 3 months ago
- R package for binmap☆12Aug 3, 2023Updated 2 years ago
- Course notes and scripts from ASReml-R short course taught by Salvador Gezan at the USDA-ARS station in Miami, FL☆13Jun 22, 2016Updated 9 years ago
- Genetic maps in autopolyploids☆31Jan 12, 2026Updated last month
- Lectures, documents and presentations☆15Dec 10, 2025Updated 2 months ago
- Example for TWAS☆12Jan 23, 2022Updated 4 years ago
- An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations☆14Mar 6, 2018Updated 8 years ago
- An interactive web portal for exploring SNPs among 1,007 rapeseed germplasm accessions☆14Mar 4, 2025Updated last year
- This is a read-only mirror of the CRAN R package repository. rrBLUP — Ridge Regression and Other Kernels for Genomic Selection. Homepag…☆14Dec 11, 2023Updated 2 years ago
- See https://biometris.github.io/LMMsolver for a full description☆18Updated this week
- ☆20Sep 6, 2024Updated last year
- PedigreeSim is software that generates simulated genetic marker data of individuals in pedigreed populations. A population can consist of…☆15Apr 13, 2021Updated 4 years ago