rzshrote / pybrops
Python Breeding Optimizer and Simulator: A Python library for simulating and optimizing breeding pipelines.
☆10Updated 5 months ago
Alternatives and similar repositories for pybrops
Users that are interested in pybrops are comparing it to the libraries listed below
Sorting:
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆44Updated 2 years ago
- VcfExplorer regroups several programs which principal aims are to map DNA and RNAseq data onto reference genome sequence, perform variant…☆14Updated last year
- VCF Observer is a VCF file analysis, comparison, and visualization tool.☆17Updated 4 months ago
- Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.☆19Updated 7 months ago
- Basic Sequence Taxonomy Annotator☆41Updated last year
- Fast inference of fine-scale recombination rates based on fused-LASSO☆50Updated last month
- GWAS software that can handle autopolyploids☆28Updated 7 months ago
- deep learning prediction of geographic location from individual genome sequences☆50Updated 3 months ago
- The PanGenome Graph Builder☆15Updated 10 months ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆48Updated 2 months ago
- Synteny Mapping and Analysis Program☆26Updated last week
- Modular Breeding Program Simulator☆39Updated last month
- Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.☆77Updated this week
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆21Updated last month
- Workshop on Genomics - Genomics Adventure☆41Updated 4 months ago
- Methods for examining PCA locally along the genome.☆79Updated 9 months ago
- NovelTree is a highly parallelized and computationally efficient phylogenomic workflow that infers gene families, gene family trees, spec…