rzshrote / pybropsLinks
Python Breeding Optimizer and Simulator: A Python library for simulating and optimizing breeding pipelines.
☆11Updated 11 months ago
Alternatives and similar repositories for pybrops
Users that are interested in pybrops are comparing it to the libraries listed below
Sorting:
- Tokenizers and Machine Learning Models for biological sequence data☆25Updated last year
- Tools and utilities for running Dockerized metagenomics tools in the Cloud☆22Updated 6 years ago
- VCF Observer is a VCF file analysis, comparison, and visualization tool.☆18Updated 10 months ago
- Transformer-based sequence correction method for genome assembly polishing☆94Updated 8 months ago
- The PanGenome Graph Builder☆16Updated last year
- TreeSwift: Fast tree module for Python 3☆84Updated last year
- Analyzes whole genome sequencing data for gene-editing verification☆10Updated last month
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆16Updated last year
- FFPopSim is a collection of C++ classes and a Python interface for efficient simulation of large populations, in particular when the prod…☆14Updated last month
- Modular Breeding Program Simulator☆43Updated 3 months ago
- AStarix: Fast and Optimal Sequence-to-Graph Aligner☆74Updated 3 years ago
- GPrimer: a fast GPU-based pipeline for primerdesign for qPCR experiments☆10Updated 6 months ago
- A high efficiency binary format for sequencing data☆78Updated last month
- NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.☆65Updated last week
- Workflow for identifying and classifying homologous gene/protein sequences☆21Updated last month
- toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files☆22Updated last year
- A framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.☆50Updated 2 months ago
- ☆14Updated last year
- Accelerated genomics workflows in the Workflow Description Language☆35Updated 2 weeks ago
- easyPheno: a model agnostic phenotype prediction framework☆14Updated this week
- Germinate is an open source plant database infrastructure and application programming platform on which complex data from genetic resourc…☆18Updated 2 weeks ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆17Updated 5 years ago
- VcfExplorer regroups several programs which principal aims are to map DNA and RNAseq data onto reference genome sequence, perform variant…☆15Updated last year
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆55Updated last year
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆95Updated 5 months ago
- Fishers Exact Test for Python (Cython)☆66Updated 8 months ago
- A tool for exploring large trees in the browser☆118Updated 2 weeks ago
- ☆83Updated 2 months ago
- Plot multiple sequence alignment (MSA)☆15Updated last year
- GRAph-based Finding of Individual Motif Occurrences☆31Updated last year