xia-lab / OptiLCMSLinks
R package for optimized LC-MS spectra processing
☆25Updated last month
Alternatives and similar repositories for OptiLCMS
Users that are interested in OptiLCMS are comparing it to the libraries listed below
Sorting:
- ☆11Updated 3 years ago
- pathway and network analysis for metabolomics☆42Updated last year
- A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery☆47Updated 2 years ago
- Metabolome Annotation Workflow☆25Updated last year
- ☆55Updated 4 years ago
- ☆25Updated last year
- TimsR: Easy access to timsTOF Pro data from R.☆12Updated 4 years ago
- Knowledge-guided multilayer network approach is executed in MetDNA2☆16Updated 2 years ago
- Chemical Similarity Enrichment analysis of metabolomics datasets☆29Updated last year
- MetEx is a tool to extract and annotate metabolites from liquid chromatography–mass spectrometry data.☆17Updated last year
- Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.☆28Updated 2 years ago
- MetNormalizer is used to normalize large scale metabolomics data.☆22Updated 4 years ago
- asari, metabolomics data preprocessing☆53Updated last month
- Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".☆30Updated 2 years ago
- A workflow for metabolite identification and accurate profiling in multidimensional LC-IM-MS-DIA measurements. DOI: 10.5281/zenodo.☆16Updated 2 years ago
- A collection of common mz values found in mass spectrometry.☆20Updated last year
- Assigning precursor-product ion relationships in indiscriminant MS/MS data☆13Updated last week
- Access Orbitrap data in R lang using C# .NET assembly - bioconductor package☆57Updated 2 months ago
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆27Updated 7 years ago
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆23Updated 3 months ago
- Metabolomics software for database-assisted deconvolution of MS/MS spectra☆19Updated last year
- Scalable and self-optimizing processing workflow for untargeted LC-MS☆28Updated last year
- FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks☆39Updated 2 months ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆27Updated 8 months ago
- Nextflow-powered MS-DIAL☆10Updated 8 months ago
- The pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of ma…☆46Updated last month
- Workflow solutions for mass-spectrometry based non-target analysis.☆67Updated last week
- ☆65Updated last year
- The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.☆34Updated 4 years ago
- Python client for PRIDE Archive Rest API.☆24Updated 5 months ago