Alternatives and similar repositories for OptiLCMS

Users that are interested in OptiLCMS are comparing it to the libraries listed below

• ZhuMSLab / DecoMetDIA
  ☆11Updated 2 years ago
• eMetaboHUB / MS-CleanR
  ☆25Updated last year
• EMSL-Computing / PeakDecoder
  A workflow for metabolite identification and accurate profiling in multidimensional LC-IM-MS-DIA measurements. DOI: 10.5281/zenodo.
  ☆16Updated 2 years ago
• LiChenPU / NetID
  A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery
  ☆46Updated last year
• jorainer / metabolomics2018
  Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.
  ☆27Updated 2 years ago
• shuzhao-li / mummichog
  pathway and network analysis for metabolomics
  ☆41Updated last year
• nf-core / metaboigniter
  Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.
  ☆21Updated 3 weeks ago
• MatteoLacki / timsr
  TimsR: Easy access to timsTOF Pro data from R.
  ☆10Updated 4 years ago
• ZhuMetLab / MetDNA2
  Knowledge-guided multilayer network approach is executed in MetDNA2
  ☆16Updated 2 years ago
• antonvsdata / notame
  An R package for non-targeted LC-MS metabolomics
  ☆18Updated 9 months ago
• zhengfj1994 / MetEx
  MetEx is a tool to extract and annotate metabolites from liquid chromatography–mass spectrometry data.
  ☆16Updated last year
• biocore / q2-qemistree
  Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".
  ☆31Updated 2 years ago
• barupal / ChemRICH
  Chemical Similarity Enrichment analysis of metabolomics datasets
  ☆29Updated 11 months ago
• RASpicer / MetabolomicsTools
  ☆55Updated 4 years ago
• shuzhao-li-lab / asari
  asari, metabolomics data preprocessing
  ☆50Updated 3 weeks ago
• RogerGinBer / RHermes
  RHermes is a semi-targeted metabolomics package to deeply characterize biological and environmental samples.
  ☆27Updated 3 weeks ago
• cbroeckl / RAMClustR
  Assigning precursor-product ion relationships in indiscriminant MS/MS data
  ☆14Updated last month
• zmahnoor14 / MAW
  Metabolome Annotation Workflow
  ☆25Updated last year
• jaspershen / metID
  Construct database and identify metabolites.
  ☆5Updated 2 years ago
• zamboni-lab / SLAW
  Scalable and self-optimizing processing workflow for untargeted LC-MS
  ☆28Updated 10 months ago
• shuzhao-li-lab / espol-workshop
  5-day workshop on Metabolomics and Data Analysis
  ☆16Updated 5 years ago
• Nextflow4Metabolomics / nextflow4ms-dial
  Nextflow-powered MS-DIAL
  ☆10Updated 5 months ago
• pattilab / DecoID
  Metabolomics software for database-assisted deconvolution of MS/MS spectra
  ☆19Updated last year
• jaspershen / MetNormalizer
  MetNormalizer is used to normalize large scale metabolomics data.
  ☆22Updated 4 years ago
• computational-metabolomics / msPurity
  R-package - Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics
  ☆16Updated last year
• kentsisresearchgroup / UltraQuant
  MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
  ☆27Updated 6 years ago
• MonashProteomics / FragPipe-Analyst
  Documentation is available here:
  ☆17Updated this week
• rformassspectrometry / metaRbolomics-book
  The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.
  ☆33Updated 4 years ago
• Functional-Metabolomics-Lab / FBMN-STATS
  FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks
  ☆38Updated this week
• YasinEl / mzRAPP
  Tool for reliability assessment of omics peprocessing
  ☆11Updated last year