Steering discrete diffusion models with labeled data for protein fitness optimization
☆31Nov 1, 2025Updated 11 months ago
Alternatives and similar repositories for SGPO
Users that are interested in SGPO are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆47Aug 5, 2025Updated last year
- ☆121Jul 20, 2026Updated 2 months ago
- Inpainting protein sequence and structure☆13Nov 10, 2023Updated 2 years ago
- Code and model weights for PoET-2, a retrieval-augmented multimodel protein language model for protein sequence generation and representa…☆31Aug 20, 2025Updated last year
- ☆12Nov 16, 2023Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Implementation of Evolutionary and Metropolis Hastings Monte Carlo for text based (e.g. nucleotide/peptide) sequences☆13Mar 7, 2024Updated 2 years ago
- [ICML 24] Robust Optimization in Protein Fitness Landscapes Using Reinforcement Learning in Latent Space☆18Aug 9, 2024Updated 2 years ago
- Aligning protein generative models with experimental fitness☆153Mar 12, 2026Updated 7 months ago
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆138Nov 17, 2021Updated 4 years ago
- ☆23Jun 10, 2025Updated last year
- ☆22Dec 3, 2024Updated last year
- ☆29Dec 2, 2024Updated last year
- ProteinFeatureAnalyzer extracts, analyzes and visualizes features from protein structures.☆14Mar 14, 2020Updated 6 years ago
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆96Jul 31, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- a Transformer-based neural network for generating highly optimized protein sequences called Regularized Latent Space Optimization (RELSO)☆90Jul 6, 2023Updated 3 years ago
- Code for RL-DIF☆16Jun 24, 2025Updated last year
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆72Aug 13, 2025Updated last year
- ☆22Jan 23, 2026Updated 8 months ago
- Official repository for the Protriever paper☆17Jun 5, 2025Updated last year
- Official repository of ReactZyme☆46Oct 12, 2024Updated 2 years ago
- Gibbs sampling for generating protein sequences☆57Jan 17, 2025Updated last year
- Adapting protein language models for structure-conditioned design☆43Aug 5, 2024Updated 2 years ago
- A computational method to optimize degenerate codons for synthesizing an informed combinatorial mutagenesis protein variant library☆17Feb 18, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Python Toolbox For Rosetta Silent Files Processing☆10Aug 2, 2021Updated 5 years ago
- ☆12Nov 30, 2023Updated 2 years ago
- Reference-free analysis of genetic architecture☆24Sep 21, 2024Updated 2 years ago
- Complete saturation mutagenesis of a protein using ESM☆19Feb 20, 2024Updated 2 years ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆37May 28, 2024Updated 2 years ago
- ☆39Nov 23, 2025Updated 10 months ago
- ☆43Jun 17, 2025Updated last year
- Consolidated repository to perform RLXF☆49Sep 14, 2026Updated last month
- Easy to use and efficient implementations of Protein Language Models☆59Oct 9, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆64Sep 14, 2023Updated 3 years ago
- Protein representation and design under a single training scheme☆25May 17, 2026Updated 5 months ago
- Extract ligand binding sites from PDB. Match the binding sites to de novo scaffolds.☆13Dec 29, 2020Updated 5 years ago
- PLM based active learning model for protein engineering☆86Aug 6, 2024Updated 2 years ago
- Scalable Protein Language Model Finetuning with Distributed Learning and Advanced Training Techniques such as LoRA.☆34Aug 31, 2026Updated last month
- ☆16Aug 16, 2025Updated last year
- Implementation code for the paper "Aggregating Residue-Level Protein Language Model Embeddings with Optimal Transport"☆25May 3, 2025Updated last year