DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.
☆55Jul 22, 2025Updated 11 months ago
Alternatives and similar repositories for DFMDock
Users that are interested in DFMDock are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A conditionally adapted protein language model for the generation of enzymes☆24Nov 26, 2024Updated last year
- Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.☆76Mar 27, 2025Updated last year
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆101Jul 29, 2024Updated last year
- gpu implementation mopac☆16Oct 11, 2025Updated 9 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆144Nov 11, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Generative Language Modeling for Antibody Design☆191Updated this week
- Official repository for DiffPepBuilder and DiffPepDock tools☆127Oct 24, 2025Updated 8 months ago
- Tokenizing Loops of Antibodies☆35Nov 23, 2025Updated 7 months ago
- Accelerated protein structural generation flow-matching model based on Apple's SimpleFold.☆17May 6, 2026Updated 2 months ago
- A generalized computational framework for biomolecular modeling.☆433Updated this week
- SwitchCraft: A Programmatic Framework for Designing State-Switching Proteins☆80Jun 1, 2026Updated last month
- DeepSP is an antibody-specific surrogate CNN model that can generate 30 spatial properties of an antibody solely based on their sequences…☆22Feb 23, 2026Updated 4 months ago
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆96Updated this week
- ☆143May 18, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Profluent-E1 family of Protein Encoder Models☆113Mar 11, 2026Updated 4 months ago
- FABind: Fast and Accurate Protein-Ligand Binding (NeurIPS 2023)☆144Jul 16, 2025Updated last year
- Humanness of de-novo designed proteins☆46May 19, 2025Updated last year
- Collection of useful bioinformatic functions and tools for various computational biology pipelines☆49Jul 13, 2026Updated last week
- Diffusion model based protein-ligand flexible docking method☆118Oct 30, 2024Updated last year
- Adapting protein language models for structure-conditioned design☆42Aug 5, 2024Updated last year
- ☆79May 4, 2026Updated 2 months ago
- SubPEx (Sub-Pocket Explorer) is a tool to enhance ensemble (multiple-receptor/relaxed-complex) virtual screening. It uses weighted ensemb…☆18Jun 30, 2025Updated last year
- Sire Molecular Simulations Framework☆67Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- SO3krates and Universal Pairwise Force Field for Molecular Simulation☆227Apr 17, 2026Updated 3 months ago
- Protein-ligand structure prediction☆240Jul 31, 2025Updated 11 months ago
- Protein Structure Analysis☆85Apr 29, 2026Updated 2 months ago
- TMol☆79Updated this week
- ☆57Jul 15, 2026Updated last week
- Fast deep learning methods for large-scale protein-protein interaction screening☆133Aug 3, 2025Updated 11 months ago
- Generative modeling of molecular dynamics trajectories☆222Mar 22, 2026Updated 3 months ago
- an integrated tool for molecular docking and virtual screening☆84Jun 12, 2026Updated last month
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Apr 13, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆62Oct 25, 2023Updated 2 years ago
- Protein representation and design under a single training scheme☆24May 17, 2026Updated 2 months ago
- Official implementation for the paper "EBMDOCK: NEURAL PROBABILISTIC PROTEIN-PROTEIN DOCKING VIA A DIFFERENTIABLE ENERGY-BASED MODEL" (IC…☆14Apr 24, 2024Updated 2 years ago
- AlphaBind code + model accompanying pre-print☆92Jul 24, 2025Updated 11 months ago
- Structure-conditioned masked language modeling for protein sequence design☆73Jan 31, 2024Updated 2 years ago
- Sapiens is a human antibody language model based on BERT.☆78Jan 22, 2026Updated 6 months ago
- ☆18Mar 16, 2025Updated last year