DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.
☆53Jul 22, 2025Updated 7 months ago
Alternatives and similar repositories for DFMDock
Users that are interested in DFMDock are comparing it to the libraries listed below
Sorting:
- A conditionally adapted protein language model for the generation of enzymes☆23Nov 26, 2024Updated last year
- Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.☆75Mar 27, 2025Updated 11 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆137Nov 11, 2025Updated 4 months ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Jul 29, 2024Updated last year
- ☆55Mar 12, 2026Updated last week
- Collection of useful bioinformatic functions and tools for various computational biology pipelines☆43Updated this week
- Generative Language Modeling for Antibody Design☆183Oct 5, 2024Updated last year
- Official repository for DiffPepBuilder and DiffPepDock tools☆119Oct 24, 2025Updated 4 months ago
- AlphaBind code + model accompanying pre-print☆91Jul 24, 2025Updated 7 months ago
- Code for "Calibrating Generative Models" by Henry Smith, Nathaniel Diamant, and Brian Trippe☆38Jan 13, 2026Updated 2 months ago
- Protein representation and design under a single training scheme☆24Mar 3, 2026Updated 2 weeks ago
- ☆76Oct 23, 2024Updated last year
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆85May 16, 2025Updated 10 months ago
- ☆61Mar 9, 2026Updated last week
- An interoperable Python framework for biomolecular simulation.☆147Updated this week
- DeepSP is an antibody-specific surrogate CNN model that can generate 30 spatial properties of an antibody solely based on their sequences…☆19Feb 23, 2026Updated 3 weeks ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆229Aug 7, 2025Updated 7 months ago
- FABind: Fast and Accurate Protein-Ligand Binding (NeurIPS 2023)☆140Jul 16, 2025Updated 8 months ago
- A generalized computational framework for biomolecular modeling.☆403Mar 5, 2026Updated 2 weeks ago
- Sire Molecular Simulations Framework☆64Mar 13, 2026Updated last week
- Adapting protein language models for structure-conditioned design☆40Aug 5, 2024Updated last year
- Diffusion model based protein-ligand flexible docking method☆117Oct 30, 2024Updated last year
- Protein-ligand structure prediction☆239Jul 31, 2025Updated 7 months ago
- SubPEx (Sub-Pocket Explorer) is a tool to enhance ensemble (multiple-receptor/relaxed-complex) virtual screening. It uses weighted ensemb…☆18Jun 30, 2025Updated 8 months ago
- Program to find drug-like RNA-ligand binding pockets.☆23Aug 5, 2025Updated 7 months ago
- ☆48Jan 10, 2025Updated last year
- an integrated tool for molecular docking and virtual screening☆77Jun 19, 2025Updated 9 months ago
- ☆19Nov 28, 2025Updated 3 months ago
- Official implementation for the paper "EBMDOCK: NEURAL PROBABILISTIC PROTEIN-PROTEIN DOCKING VIA A DIFFERENTIABLE ENERGY-BASED MODEL" (IC…☆14Apr 24, 2024Updated last year
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Aug 26, 2024Updated last year
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆61Oct 25, 2023Updated 2 years ago
- Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction☆89Oct 6, 2025Updated 5 months ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆121May 27, 2025Updated 9 months ago
- A pipeline that used ML model based on Rosetta descriptors to predict the binding affinity of protein-protein complexes☆51Oct 27, 2025Updated 4 months ago
- Structure-conditioned masked language modeling for protein sequence design☆72Jan 31, 2024Updated 2 years ago
- Sapiens is a human antibody language model based on BERT.☆72Jan 22, 2026Updated last month
- ☆118Dec 7, 2022Updated 3 years ago
- Aligning protein generative models with experimental fitness☆120Mar 12, 2026Updated last week
- ☆19Mar 16, 2025Updated last year