Alternatives and similar repositories for DFMDock:

Users that are interested in DFMDock are comparing it to the libraries listed below

• LBM-EPFL / CARBonAra
  Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…
  ☆35Updated 2 months ago
• patrickbryant1 / Cfold
  Structure prediction of alternative protein conformations
  ☆72Updated 5 months ago
• sokrypton / af2bind
  ☆46Updated 3 weeks ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆36Updated 4 months ago
• compsciencelab / mdCATH
  This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…
  ☆31Updated 2 months ago
• iamysk / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆37Updated last week
• bene837 / af2seq
  ☆41Updated 4 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆40Updated last month
• gitter-lab / metl
  Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models
  ☆33Updated this week
• YuzheWangPKU / DiffPepBuilder
  Official repository for Target-Specific De Novo Peptide Binder Design with DiffPepBuilder
  ☆76Updated last week
• BioinfoMachineLearning / FlowDock
  Geometric Flow Matching for Generative Protein-Ligand Docking and Affinity Prediction (CASP16)
  ☆69Updated this week
• iambic-therapeutics / np-bench
  A benchmark for 3D biomolecular structure prediction models
  ☆52Updated last month
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆54Updated last year
• KULL-Centre / _2024_cagiada_stability
  ☆60Updated last month
• Graylab / GeoDock
  Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.
  ☆87Updated 6 months ago
• dakpinaroglu / Frame2seq
  Structure-conditioned masked language modeling for protein sequence design
  ☆61Updated 11 months ago
• bwicky / oligomer_hallucination
  ☆36Updated last year
• karma211225 / KarmaLoop
  Highly accurate and efficient deep learning paradigm for full-atom protein loop modeling with KarmaLoop
  ☆11Updated 7 months ago
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆73Updated 2 weeks ago
• WillHua127 / EnzymeFlow
  Official repository of EnzymeFlow
  ☆74Updated last month
• aqlaboratory / QuickBind
  A Light-Weight And Interpretable Molecular Docking Model
  ☆20Updated 3 months ago
• ELELAB / RosettaDDGPrediction
  ☆58Updated 2 months ago
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆31Updated last year
• ohuelab / ColabDesign-cyclic-binder
  ☆29Updated last year
• huhlim / alphafold-multistate
  ☆33Updated 9 months ago
• CDDLeiden / PCMol
  Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.
  ☆61Updated 2 months ago
• anton-bushuiev / PPIformer
  Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)
  ☆47Updated 2 weeks ago
• sirius777coder / GPDL
  Generative diverse protein backbones by protein language model
  ☆29Updated last month
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆32Updated 4 months ago
• amyxlu / plaid
  Multimodal generation of protein sequence and all-atom structure using latent diffusion, with compositional function and taxonomic prompt…
  ☆63Updated last month