Alternatives and similar repositories for autoadapt

Users that are interested in autoadapt are comparing it to the libraries listed below

• grenaud / deML
  Maximum likelihood demultiplexing
  ☆47Updated 5 months ago
• tommyau / bamclipper
  Remove primer sequence from BAM alignments by soft-clipping
  ☆31Updated 5 years ago
• mateidavid / fast5
  A C++ header-only library for reading Oxford Nanopore Fast5 files
  ☆53Updated 3 years ago
• schatzlab / appliedgenomics2017
  JHU EN.600.649: Computational Genomics: Applied Comparative Genomics
  ☆58Updated 7 years ago
• ngsutils / ngsutils
  Tools for next-generation sequencing analysis
  ☆88Updated 6 years ago
• statgen / fastQValidator
  Validate FastQ Files
  ☆36Updated 6 years ago
• arq5x / bedtools-protocols
  ☆78Updated 11 years ago
• ekg / bamaddrg
  adds sample names and read-group (RG) tags to BAM alignments
  ☆51Updated 4 years ago
• lh3 / bfc
  High-performance error correction for Illumina resequencing data
  ☆72Updated 9 years ago
• jstjohn / SimSeq
  An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…
  ☆66Updated 10 years ago
• mgymrek / pybamview
  Browser based application for viewing bam alignments
  ☆56Updated 8 years ago
• juliangehring / SomaticSignatures
  The SomaticSignatures package offers the framework for identifying mutational signatures of single nucleotide variants (SNVs) from high-t…
  ☆22Updated 5 years ago
• taylor-lab / hotspots
  Identifying recurrent mutations in cancer
  ☆37Updated 4 years ago
• Oshlack / STRetch
  Method for detecting STR expansions from short-read sequencing data
  ☆63Updated 3 years ago
• Illumina / Isaac4
  Isaac aligner version 4
  ☆18Updated 3 years ago
• genome / somatic-sniper
  A tool to call somatic single nucleotide variants.
  ☆41Updated 9 years ago
• macarthur-lab / igv_utils
  utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.
  ☆49Updated 6 years ago
• COMBINE-lab / RapMap
  Rapid sensitive and accurate read mapping via quasi-mapping
  ☆90Updated 5 years ago
• jandrewrfarrell / RUFUS
  RUFUS k-mer based genomic variant detection
  ☆54Updated 6 months ago
• aquaskyline / LRSIM
  10x Genomics Reads Simulator
  ☆45Updated last year
• pinellolab / AmpUMI
  Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)
  ☆41Updated last year
• Illumina / gvcfgenotyper
  A utility for merging and genotyping Illumina-style GVCFs.
  ☆33Updated 6 years ago
• pmelsted / pizzly
  Fast fusion detection using kallisto
  ☆80Updated last month
• jdidion / atropos
  An NGS read trimming tool that is specific, sensitive, and speedy. (production)
  ☆122Updated 2 months ago
• bioinformed / vgraph
  vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…
  ☆43Updated 3 years ago
• broadinstitute / wdltool
  ☆18Updated 7 years ago
• aryeelab / umi
  Preprocessing tools for unique molecular index (UMI) sequencing reads
  ☆31Updated 2 years ago
• Oshlack / Lace
  Building SuperTranscripts: A linear representation of transcriptome data
  ☆67Updated 4 years ago
• GregoryFaust / yaha
  yaha: a flexible, sensitive and accurate DNA alignment tool designed to find optimal split-read mappings on single-end queries from 100bp…
  ☆21Updated 7 years ago
• JohnLonginotto / pybam
  Very simple, pure python, BAM file reader
  ☆79Updated 6 years ago