optimuscoprime / autoadaptLinks
Automatic quality control for FASTQ sequencing files
☆13Updated 7 years ago
Alternatives and similar repositories for autoadapt
Users that are interested in autoadapt are comparing it to the libraries listed below
Sorting:
- Maximum likelihood demultiplexing☆50Updated 11 months ago
- a wee tool for random access into BGZF files.☆86Updated 7 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆68Updated 11 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- Validate FastQ Files☆36Updated 7 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 6 years ago
- ☆96Updated 3 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆90Updated 5 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 4 years ago
- High-performance error correction for Illumina resequencing data☆74Updated 9 years ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- Fast spliced aligner with low memory requirements☆41Updated 10 years ago
- ☆78Updated 11 years ago
- JHU EN.600.649: Computational Genomics: Applied Comparative Genomics☆58Updated 7 years ago
- 10x Genomics Reads Simulator☆46Updated 2 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 5 years ago
- Method for detecting STR expansions from short-read sequencing data☆63Updated 4 years ago
- Isaac aligner version 4☆19Updated 3 years ago
- NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms whil…☆88Updated 6 years ago
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- Rapid Mapping-based Isoform Quantification from RNA-Seq Reads☆127Updated 3 years ago
- Fast fusion detection using kallisto☆79Updated 7 months ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Bring Your Own Bioinformatics☆27Updated 9 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆98Updated 2 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 7 years ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago