OleksiiR / cSTAR_Nature
Scripts used in the paper "Control of cell state transitions" by Rukhlenko et al.
☆15Updated 2 years ago
Alternatives and similar repositories for cSTAR_Nature:
Users that are interested in cSTAR_Nature are comparing it to the libraries listed below
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆46Updated 3 months ago
- Matplotlib style for scientific publications☆13Updated 3 weeks ago
- ☆30Updated last week
- single cell foundation model for Gene network inference and more☆16Updated 7 months ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆56Updated this week
- Spatial reconstruction of dissociated single-cell data☆17Updated last year
- Template repository for creating novel models with scvi-tools☆20Updated 2 years ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆33Updated 2 weeks ago
- Nonnegative spatial factorization for multivariate count data☆58Updated last year
- ☆53Updated 3 weeks ago
- spatial transcriptome, single cell☆68Updated 2 years ago
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆49Updated 9 months ago
- ☆60Updated last year
- ☆45Updated 2 years ago
- Multi-omic velocity inference☆110Updated 6 months ago
- Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).☆21Updated last week
- Global Waddington-OT☆23Updated last month
- Multi-omic single-cell optimal transport tools☆151Updated this week
- A python package for chromVAR☆27Updated last year
- ☆39Updated last week
- Python implementation of Milo for differential abundance testing on KNN graph☆67Updated 2 months ago
- Python implementation of the Slingshot pseudotime algorithm☆59Updated 11 months ago
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)☆30Updated last month
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆53Updated 3 weeks ago
- A method for analyzing scATAC-seq experiments.☆30Updated last month
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆27Updated 3 years ago
- SIMBA: SIngle-cell eMBedding Along with features☆19Updated last year
- ☆24Updated last year
- ☆26Updated last year
- Spatial direct messaging detected by bivariate Moran☆26Updated 3 months ago