Alternatives and similar repositories for MedTagger

Users that are interested in MedTagger are comparing it to the libraries listed below

• CogStack / MedCATtrainer
  A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.
  ☆85Updated last week
• OHNLP / MedTator
  A Serverless Text Annotation Tool for Corpus Development
  ☆57Updated 6 months ago
• MIT-LCP / mimic-omop
  Mapping the MIMIC-III database to the OMOP schema
  ☆141Updated last year
• CogStack / CogStack-SemEHR
  Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research
  ☆89Updated 2 years ago
• beamandrew / cui2vec
  ☆55Updated 5 years ago
• OHDSI / Criteria2Query
  [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…
  ☆70Updated 3 weeks ago
• som-shahlab / trove
  Weakly supervised medical named entity classification
  ☆73Updated 2 years ago
• clinicalml / omop-learn
  Python package for machine learning for healthcare using a OMOP common data model
  ☆110Updated 2 years ago
• OHDSI / NLPTools
  [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis
  ☆33Updated last year
• BCHSI / philter-ucsf
  Open source clinical text de-identification
  ☆141Updated last year
• LHNCBC / metamaplite
  A near real-time named-entity recognizer
  ☆61Updated 2 months ago
• Georgetown-IR-Lab / QuickUMLS
  System for Medical Concept Extraction and Linking
  ☆414Updated last year
• lisavirginia / clinical-abbreviations
  ☆66Updated 4 years ago
• HPIMS / phe2vec
  Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records
  ☆24Updated 4 years ago
• ncbo / ncbo_rest_sample_code
  Sample code that demonstrates the use of the NCBO REST services
  ☆43Updated last year
• AIM-Harvard / SDoH
  Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…
  ☆47Updated last year
• OHDSI / MIMIC
  MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…
  ☆83Updated last week
• kdpsingh / clinspacy
  Clinical Natural Language Processing using spaCy, scispacy, and medspacy
  ☆100Updated last year
• DeepPhe / DeepPhe-Release
  Public release of the DeepPhe analytic software
  ☆30Updated 3 weeks ago
• uf-hobi-informatics-lab / GatorTron
  all scripts used in gatortron project
  ☆122Updated last year
• MLD3 / FIDDLE
  FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…
  ☆96Updated 2 months ago
• blpercha / umls-to-graph
  Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.
  ☆41Updated 5 years ago
• i2b2 / i2b2-data
  The i2b2 data repository
  ☆42Updated this week
• OHNLP / MedXN
  MedXN is a medication normalization system built upon Apache UIMA framework.
  ☆24Updated last year
• CogStack / MedCAT
  Medical Concept Annotation Tool
  ☆509Updated last month
• gmichalo / UmlsBERT
  ☆99Updated 3 years ago
• BD2KOnFHIR / NLP2FHIR
  NLP2FHIR: A FHIR-based Clinical Data Normalization Pipeline and Its Applications
  ☆61Updated 3 years ago
• CogStack / MedCATtutorials
  General tutorials for the setup and use of MedCAT.
  ☆40Updated 3 months ago
• mghassem / medicationCategories
  Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…
  ☆29Updated 7 years ago
• MIT-LCP / bloatectomy
  A python package for removing duplicate text in clinical notes or other documents
  ☆37Updated 5 years ago