OHNLP / MedTaggerLinks
MedTagger is a light weight clinical NLP system built upon Apache UIMA.
☆70Updated 7 months ago
Alternatives and similar repositories for MedTagger
Users that are interested in MedTagger are comparing it to the libraries listed below
Sorting:
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆85Updated 3 months ago
- ☆55Updated 5 years ago
- A Serverless Text Annotation Tool for Corpus Development☆57Updated 10 months ago
- A near real-time named-entity recognizer☆62Updated 5 months ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆73Updated this week
- Mapping the MIMIC-III database to the OMOP schema☆143Updated last year
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆34Updated last year
- Python package for machine learning for healthcare using a OMOP common data model☆111Updated 2 years ago
- Sample code that demonstrates the use of the NCBO REST services☆43Updated last year
- ☆66Updated 4 years ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 5 years ago
- Weakly supervised medical named entity classification☆72Updated 3 years ago
- NLP2FHIR: A FHIR-based Clinical Data Normalization Pipeline and Its Applications☆61Updated 3 years ago
- General tutorials for the setup and use of MedCAT.☆41Updated 7 months ago
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…☆29Updated 8 years ago
- Winners of the SNOMED CT Entity Linking Challenge☆43Updated last year
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Updated 5 years ago
- Public release of the DeepPhe analytic software☆30Updated 3 weeks ago
- ☆101Updated 3 years ago
- ☆16Updated 6 months ago
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆87Updated last month
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆32Updated last year
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆41Updated last year
- System for Medical Concept Extraction and Linking☆425Updated last year
- Python module to parse UMLS source files☆20Updated 2 years ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆97Updated 6 months ago
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆48Updated last year
- Medical Concept Annotation Tool☆516Updated 5 months ago
- Open source clinical text de-identification☆144Updated last year