Alternatives and similar repositories for MedTagger

Users that are interested in MedTagger are comparing it to the libraries listed below

• OHDSI / NLPTools
  [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis
  ☆32Updated last year
• lisavirginia / clinical-abbreviations
  ☆64Updated 4 years ago
• LHNCBC / metamaplite
  A near real-time named-entity recognizer
  ☆60Updated last year
• MIT-LCP / mimic-omop
  Mapping the MIMIC-III database to the OMOP schema
  ☆135Updated last year
• OHNLP / MedTator
  A Serverless Text Annotation Tool for Corpus Development
  ☆56Updated 3 months ago
• OHDSI / Criteria2Query
  [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…
  ☆67Updated 10 months ago
• CogStack / CogStack-SemEHR
  Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research
  ☆89Updated 2 years ago
• BD2KOnFHIR / NLP2FHIR
  NLP2FHIR: A FHIR-based Clinical Data Normalization Pipeline and Its Applications
  ☆61Updated 2 years ago
• ncbo / ncbo_rest_sample_code
  Sample code that demonstrates the use of the NCBO REST services
  ☆44Updated last year
• DeepPhe / DeepPhe-Release
  Public release of the DeepPhe analytic software
  ☆30Updated 2 years ago
• CogStack / MedCATtrainer
  A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.
  ☆80Updated 2 weeks ago
• blpercha / umls-to-graph
  Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.
  ☆41Updated 4 years ago
• som-shahlab / trove
  Weakly supervised medical named entity classification
  ☆73Updated 2 years ago
• OHDSI / MIMIC
  MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…
  ☆78Updated this week
• OHNLP / Backbone
  Provides backbone infrastructure elements for OHNLP toolsets.
  ☆14Updated 3 weeks ago
• susom / tide
  ☆15Updated 6 months ago
• beamandrew / cui2vec
  ☆55Updated 5 years ago
• OHNLP / N3C-NLP-Documentation
  Master Documentation Repository for OHNLP Projects Related to Coronavirus Disease 2019
  ☆21Updated 2 years ago
• MLD3 / FIDDLE
  FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…
  ☆93Updated 11 months ago
• CogStack / MedCATtutorials
  General tutorials for the setup and use of MedCAT.
  ☆37Updated last week
• Lybarger / sdoh_extraction
  ☆18Updated last year
• clinicalml / omop-learn
  Python package for machine learning for healthcare using a OMOP common data model
  ☆108Updated last year
• HPIMS / phe2vec
  Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records
  ☆24Updated 4 years ago
• callahantiff / OMOP2OBO
  OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies
  ☆88Updated last year
• mghassem / medicationCategories
  Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…
  ☆29Updated 7 years ago
• jianlins / PyRuSH
  init
  ☆12Updated 6 months ago
• uf-hobi-informatics-lab / NLPreprocessing
  A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization
  ☆31Updated last year
• AnthonyMRios / pymetamap
  Python wraper for MetaMap
  ☆174Updated 4 years ago
• OHDSI / OncologyWG
  Oncology Working Group Repository
  ☆56Updated this week
• Yuqi92 / deep-patient-representation-mimiciii-multitask
  Implementation of Deep Patient Representation of Clinical Notes at Intensive Care Unit for Multi-Task Prediction
  ☆32Updated 5 years ago