Alternatives and similar repositories for clinical-abbreviations

Users that are interested in clinical-abbreviations are comparing it to the libraries listed below

• beamandrew / cui2vec
  ☆55Updated 5 years ago
• OHNLP / MedTagger
  MedTagger is a light weight clinical NLP system built upon Apache UIMA.
  ☆69Updated last month
• kdpsingh / clinspacy
  Clinical Natural Language Processing using spaCy, scispacy, and medspacy
  ☆100Updated last year
• OHNLP / MedTator
  A Serverless Text Annotation Tool for Corpus Development
  ☆56Updated 4 months ago
• uf-hobi-informatics-lab / NLPreprocessing
  A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization
  ☆31Updated last year
• Melbourne-BMDS / mimic34md2020_materials
  ☆22Updated 2 years ago
• CogStack / MedCATtutorials
  General tutorials for the setup and use of MedCAT.
  ☆37Updated last month
• clinicalml / prancer
  Platform enabling Rapid Annotation for Clinical Entity Recognition
  ☆50Updated 3 years ago
• CogStack / MedCATtrainer
  A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.
  ☆81Updated this week
• OHDSI / NLPTools
  [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis
  ☆33Updated last year
• som-shahlab / trove
  Weakly supervised medical named entity classification
  ☆73Updated 2 years ago
• OHDSI / Criteria2Query
  [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…
  ☆68Updated this week
• uf-hobi-informatics-lab / ClinicalTransformerNER
  a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms
  ☆147Updated last year
• OHDSI / MIMIC
  MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…
  ☆80Updated 2 weeks ago
• CogStack / MedCATservice
  Running MedCAT as a RESTful web service
  ☆22Updated this week
• asappresearch / clip
  ☆29Updated 3 years ago
• CogStack / CogStack-SemEHR
  Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research
  ☆89Updated 2 years ago
• jianlins / PyRuSH
  init
  ☆12Updated 6 months ago
• LHNCBC / metamaplite
  A near real-time named-entity recognizer
  ☆60Updated last year
• uf-hobi-informatics-lab / GatorTron
  all scripts used in gatortron project
  ☆118Updated last year
• ncbo / ncbo_rest_sample_code
  Sample code that demonstrates the use of the NCBO REST services
  ☆44Updated last year
• uf-hobi-informatics-lab / SDoH_SODA
  ☆18Updated last year
• hpi-dhc / xmen
  ✖️MEN - A Modular Toolkit for Cross-Lingual Medical Entity Normalization
  ☆27Updated 5 months ago
• AIM-Harvard / SDoH
  Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…
  ☆45Updated last year
• gmichalo / UmlsBERT
  ☆98Updated 3 years ago
• simonlevine / clinical-longformer
  ☆38Updated 3 years ago
• clinicalml / omop-learn
  Python package for machine learning for healthcare using a OMOP common data model
  ☆108Updated 2 years ago
• callahantiff / OMOP2OBO
  OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies
  ☆88Updated last year
• MLD3 / FIDDLE
  FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…
  ☆94Updated last year
• BCHSI / philter-ucsf
  Open source clinical text de-identification
  ☆128Updated 10 months ago