A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.
☆85Sep 4, 2025Updated 11 months ago
Alternatives and similar repositories for MedCATtrainer
Users that are interested in MedCATtrainer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Medical Concept Annotation Tool☆532Jul 25, 2025Updated last year
- General tutorials for the setup and use of MedCAT.☆41May 22, 2025Updated last year
- Building data processing pipelines for documents processing with NLP using Apache NiFi and related services☆59Updated this week
- Instructions and code to create for a table of UMLS, SNOMED or HPO concepts containing Dutch medical names, usable in named entity recogn…☆12Jan 20, 2023Updated 3 years ago
- Distributed, fault tolerant batch processing for Natural Language Applications and Search, using remote partitioning☆48Jan 13, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆29Feb 13, 2026Updated 5 months ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆90Jan 13, 2023Updated 3 years ago
- Running MedCAT as a RESTful web service☆22Jun 23, 2025Updated last year
- UMLS to SNOMED CT and ICD-10-CM mapping tool: A Python script for generating JSON files containing mappings between UMLS CUIs and SNOMED …☆16Feb 11, 2026Updated 5 months ago
- using AI model to infer patient phenotypes from identified named entities (instances of biomedical concepts)☆10Jan 13, 2023Updated 3 years ago
- Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)☆16Jan 17, 2022Updated 4 years ago
- Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records☆39Dec 27, 2022Updated 3 years ago
- FHIR Medication server that makes it easy to make medicines terminology content available as a local service.☆22Feb 12, 2021Updated 5 years ago
- SNOMED CT User Interface examples☆27May 29, 2026Updated 2 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- MedXN is a medication normalization system built upon Apache UIMA framework.☆25Jan 24, 2024Updated 2 years ago
- Corpus of Online Medical EnTities: the cometA corpus☆51Mar 6, 2025Updated last year
- Virtual Machine containing SynPUF data in OMOP CDM, a RDBS including query client, WebAPI, ATLAS, R and Python.☆59Mar 7, 2021Updated 5 years ago
- Grounding of biomedical named entities with contextual disambiguation☆54Jun 29, 2026Updated last month
- Scalable SNOMED CT Terminology Server using Elasticsearch☆383Updated this week
- Snow Owl Terminology Server. This version is no longer maintained. Please use the upstream version or the alternate Snowstorm Terminology…☆11Feb 11, 2020Updated 6 years ago
- ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)☆75Mar 12, 2023Updated 3 years ago
- Streamlined Data Mapping to OMOP☆24Updated this week
- ☆101Feb 25, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Sample relational database load scripts and SQL queries for processing SNOMED CT-AU RF2 release files.☆18Jul 17, 2024Updated 2 years ago
- Publication: Linked electronic health records for research on a nationwide cohort including over 54 million people in England☆18Jun 22, 2026Updated last month
- Winners of the SNOMED CT Entity Linking Challenge☆57Apr 11, 2024Updated 2 years ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆43Jun 19, 2026Updated last month
- Hephaestus - ETL and ML tools for OHDSI - OMOP CDM☆13Sep 18, 2025Updated 10 months ago
- A walkthrough of building a FHIR content implementation guide☆15May 16, 2023Updated 3 years ago
- Apache Tika running as a web service☆18Jan 14, 2023Updated 3 years ago
- ☆14Jun 15, 2026Updated last month
- This repository contains the code used for distillation and fine-tuning of compact biomedical transformers that have been introduced in t…☆19Mar 26, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆226Dec 11, 2024Updated last year
- Library for clinical NLP with spaCy.☆673Jun 4, 2026Updated 2 months ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆347Nov 9, 2021Updated 4 years ago
- Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries, MCP server and FHIR import.☆65Updated this week
- In-BoXBART: Get Instructions into Biomedical Multi-task Learning☆15Aug 23, 2022Updated 3 years ago
- A modern, lightweight medication sig parser.☆12Jan 21, 2025Updated last year
- General purpose application server for the radar platform currently with capability to schedule push notifications☆11Updated this week