CogStack / MedCATtrainerLinks
A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.
☆80Updated 2 weeks ago
Alternatives and similar repositories for MedCATtrainer
Users that are interested in MedCATtrainer are comparing it to the libraries listed below
Sorting:
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆31Updated last year
- General tutorials for the setup and use of MedCAT.☆37Updated last week
- ☆98Updated 3 years ago
- Implementation and demo of explainable coding of clinical notes with Hierarchical Label-wise Attention Networks (HLAN)☆61Updated 2 years ago
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆43Updated last year
- ☆55Updated 5 years ago
- Weakly supervised medical named entity classification☆73Updated 2 years ago
- Running MedCAT as a RESTful web service☆22Updated last week
- A Python Natural Language Processing Toolkit for Medical Text Generation☆79Updated last week
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 4 years ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆147Updated last year
- ☆64Updated 4 years ago
- ☆29Updated 3 years ago
- ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)☆74Updated 2 years ago
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆78Updated 2 years ago
- A Serverless Text Annotation Tool for Corpus Development☆56Updated 3 months ago
- Medical Concept Annotation Tool☆497Updated this week
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆68Updated 3 weeks ago
- Distributed, fault tolerant batch processing for Natural Language Applications and Search, using remote partitioning☆43Updated 2 years ago
- An information extraction system for free-text eligibility criteria☆37Updated 6 years ago
- MedXN is a medication normalization system built upon Apache UIMA framework.☆23Updated last year
- ☆60Updated last year
- NLP2FHIR: A FHIR-based Clinical Data Normalization Pipeline and Its Applications☆61Updated 2 years ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆93Updated 11 months ago
- A project for developing transformer-based models for clinical relation extraction☆128Updated last year
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆45Updated 4 years ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆50Updated 3 years ago
- Clinical Text Summarization with Syntax-Based Negation and Semantic Concept Identification☆21Updated 5 years ago
- A python package for removing duplicate text in clinical notes or other documents☆36Updated 4 years ago