CogStack / MedCATtutorials
General tutorials for the setup and use of MedCAT.
☆37Updated last week
Alternatives and similar repositories for MedCATtutorials:
Users that are interested in MedCATtutorials are comparing it to the libraries listed below
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆59Updated last year
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆80Updated this week
- Expert-Curated Oncology Reports to Advance Language Model Inference☆27Updated last year
- The project was to build and release the first publicly available code evidence dataset called MDACE on a subset of the MIMIC-III clinica…☆28Updated last year
- Winners of the SNOMED CT Entity Linking Challenge☆33Updated last year
- PMC-Patients☆96Updated 10 months ago
- all scripts used in gatortron project☆116Updated last year
- PLM-ICD: Automatic ICD Coding with Pretrained Language Models☆66Updated last year
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆31Updated 11 months ago
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆45Updated last year
- PMC-Patients: A Large-scale Dataset of Patient Summaries and Relations for Benchmarking Retrieval-based Clinical Decision Support Systems…☆66Updated last year
- ☆18Updated last year
- ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)☆74Updated 2 years ago
- A Python Natural Language Processing Toolkit for Medical Text Generation☆76Updated 6 months ago
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆76Updated this week
- Clinical text summarization by adapting large language models☆141Updated 9 months ago
- Predicting ICD Codes from Clinical Notes☆61Updated 4 years ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆92Updated 10 months ago
- Basic setup and easy to follow templates to interact and search CogStack for data analysts☆12Updated last month
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆67Updated 2 weeks ago
- Code for BEHRT: Transformer for Electronic Health Records☆109Updated 2 years ago
- ☆24Updated 4 months ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆147Updated last year
- Blog post on Medium☆49Updated 2 years ago
- ☆98Updated 3 years ago
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Updated 4 years ago
- ☆59Updated last year
- A collection of papers on automated medical coding from free-texts☆139Updated 4 months ago
- Code Synonyms Do Matter: Multiple Synonyms Matching Network for Automatic ICD Coding [ACL 2022]☆52Updated 2 years ago