gmichalo / UmlsBERT
☆96Updated 2 years ago
Alternatives and similar repositories for UmlsBERT:
Users that are interested in UmlsBERT are comparing it to the libraries listed below
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆146Updated last year
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆79Updated 2 years ago
- ☆38Updated 2 years ago
- Weakly supervised medical named entity classification☆70Updated 2 years ago
- A fine-tuned BERT using EHR notes.☆14Updated 5 years ago
- Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System☆40Updated 5 years ago
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆158Updated 3 years ago
- A project for developing transformer-based models for clinical relation extraction☆127Updated last year
- ☆145Updated last year
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆27Updated 3 years ago
- BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA☆35Updated last year
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆182Updated last year
- ☆52Updated 4 years ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆116Updated 2 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆317Updated 3 years ago
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆30Updated 8 months ago
- Code for the emrQA question answering dataset☆144Updated 3 years ago
- Data and code from our "Inferring Which Medical Treatments Work from Reports of Clinical Trials", NAACL 2019. This work concerns inferrin…☆61Updated 3 years ago
- Corpus of Online Medical EnTities: the cometA corpus☆50Updated 9 months ago
- Clinical Text Summarization with Syntax-Based Negation and Semantic Concept Identification☆21Updated 4 years ago
- ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)☆74Updated last year
- Implementation and demo of explainable coding of clinical notes with Hierarchical Label-wise Attention Networks (HLAN)☆59Updated 2 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆79Updated this week
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆162Updated last year
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆176Updated 2 years ago
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆45Updated 4 years ago
- Transformers for Clinical NLP☆23Updated 2 weeks ago
- BioFLAIR: Pretrained Pooled Contextualized Embeddings for Biomedical Sequence Labeling Tasks☆41Updated 4 years ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆50Updated 2 years ago
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.☆290Updated 3 years ago