Alternatives and similar repositories for NLP2FHIR:

Users that are interested in NLP2FHIR are comparing it to the libraries listed below

• OHDSI / NLPTools
  [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis
  ☆32Updated last year
• rorydavidson / SNOMED-CT-Database
  Represent SNOMED CT in a relational database
  ☆82Updated 2 years ago
• OHDSI / Aphrodite
  [in development]
  ☆37Updated 3 years ago
• omoponfhir / omoponfhir-main
  Main OMOPonFHIR Settings
  ☆45Updated 3 years ago
• PheMA / cql-on-omop
  Runs CQL phenotype definitions against an OMOP repository
  ☆12Updated last year
• CogStack / MedCATtrainer
  A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.
  ☆79Updated last week
• CDMFORUM / CDM-GUIDANCE
  The PCORnet Common Data Model (CDM) Forum guidance repository contains materials intended to support implementation efforts by data partn…
  ☆30Updated 4 years ago
• OHDSI / Athena
  Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM
  ☆60Updated this week
• tmills / ctakes-docker
  ☆23Updated 5 years ago
• ebegoli / SynthNotes
  A generator of synthetic psychiatric notes.
  ☆16Updated 4 years ago
• CogStack / CogStack-SemEHR
  Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research
  ☆89Updated 2 years ago
• uwrit / leaf
  Leaf Clinical Data Explorer
  ☆91Updated 4 months ago
• smart-on-fhir / bulk-data-server
  ☆49Updated last month
• OHDSI / OncologyWG
  Oncology Working Group Repository
  ☆56Updated last month
• chb / py-umls
  Basic Python 3 tools to interact with UMLS lexica
  ☆124Updated 6 years ago
• DeepPhe / DeepPhe-Release
  Public release of the DeepPhe analytic software
  ☆30Updated 2 years ago
• cqframework / hedis-ig
  HEDIS FHIR-based Quality Reporting
  ☆29Updated 5 years ago
• MIT-LCP / mimic-omop
  Mapping the MIMIC-III database to the OMOP schema
  ☆132Updated last year
• blpercha / umls-to-graph
  Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.
  ☆41Updated 4 years ago
• OHDSI / Usagi
  Usagi is an application to help create mappings between coding systems and the Vocabulary standard concepts.
  ☆93Updated 9 months ago
• ncbo / umls2rdf
  These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This…
  ☆86Updated 6 months ago
• National-Clinical-Cohort-Collaborative / Data-Ingestion-and-Harmonization
  Data Ingestion and Harmonization
  ☆43Updated 2 years ago
• sync-for-science / a3
  A3 - FHIR-native ETL+Q Prototype
  ☆14Updated 4 years ago
• apache / ctakes
  Apache cTAKES is a Natural Language Processing (NLP) platform for clinical text.
  ☆61Updated last week
• CogStack / CogStack-Pipeline
  Distributed, fault tolerant batch processing for Natural Language Applications and Search, using remote partitioning
  ☆43Updated 2 years ago
• dermatologist / pyomop
  Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries!
  ☆43Updated last week
• callahantiff / OMOP2OBO
  OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies
  ☆86Updated last year
• susom / tide
  ☆14Updated 3 months ago
• IHTSDO / SNOMED-in-5-minutes
  Easy-to-use tutorials for accessing SNOMED APIs within 5 min using various programming languages
  ☆126Updated 2 months ago
• LHNCBC / metamaplite
  A near real-time named-entity recognizer
  ☆59Updated 9 months ago