BD2KOnFHIR / NLP2FHIR
NLP2FHIR: A FHIR-based Clinical Data Normalization Pipeline and Its Applications
☆60Updated 2 years ago
Alternatives and similar repositories for NLP2FHIR:
Users that are interested in NLP2FHIR are comparing it to the libraries listed below
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆32Updated last year
- [in development]☆37Updated 3 years ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- Represent SNOMED CT in a relational database☆82Updated 2 years ago
- A near real-time named-entity recognizer☆59Updated 8 months ago
- Distributed, fault tolerant batch processing for Natural Language Applications and Search, using remote partitioning☆43Updated 2 years ago
- Master Documentation Repository for OHNLP Projects Related to Coronavirus Disease 2019☆21Updated 2 years ago
- Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM☆60Updated 4 months ago
- Oncology Working Group Repository☆56Updated this week
- Mapping the MIMIC-III database to the OMOP schema☆131Updated 10 months ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆64Updated 6 months ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 4 years ago
- The PCORnet Common Data Model (CDM) Forum guidance repository contains materials intended to support implementation efforts by data partn…☆30Updated 4 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆79Updated this week
- Leaf Clinical Data Explorer☆90Updated 3 months ago
- Easy-to-use tutorials for accessing SNOMED APIs within 5 min using various programming languages☆125Updated last month
- ☆14Updated 2 months ago
- An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/☆107Updated 10 months ago
- Runs CQL phenotype definitions against an OMOP repository☆12Updated last year
- Data Ingestion and Harmonization☆43Updated last year
- Public release of the DeepPhe analytic software☆30Updated 2 years ago
- Represent SNOMED CT in a different types of databases☆112Updated 3 weeks ago
- FHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured informat…☆63Updated 3 weeks ago
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆64Updated 2 months ago
- A Neo4j Plugin for Handling HL7 FHIR Data☆61Updated last year
- ☆25Updated last week
- Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries!☆39Updated this week
- A generator of synthetic psychiatric notes.☆16Updated 4 years ago
- Main OMOPonFHIR Settings☆45Updated 3 years ago
- Health NLP Examples☆88Updated 6 years ago