BCHSI / philter-ucsfLinks
Open source clinical text de-identification
☆146Updated last year
Alternatives and similar repositories for philter-ucsf
Users that are interested in philter-ucsf are comparing it to the libraries listed below
Sorting:
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆73Updated last week
- Mapping the MIMIC-III database to the OMOP schema☆143Updated last year
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆70Updated 7 months ago
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆87Updated last month
- ☆66Updated 4 years ago
- Python package for machine learning for healthcare using a OMOP common data model☆111Updated 2 years ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- Winners of the SNOMED CT Entity Linking Challenge☆43Updated last year
- Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM☆72Updated 4 months ago
- ☆16Updated 6 months ago
- clinical free text de-identification software☆41Updated 7 years ago
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆48Updated last year
- Library for clinical NLP with spaCy.☆623Updated 4 months ago
- ☆55Updated 5 years ago
- [Under development] Assessment of Pre-trained Observational Large Language-models in OHDSI (APOLLO)☆14Updated last year
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆94Updated last month
- A deidentifier / deidentification pipeline developed by Stanford and Penn as part of the MIDRC organization.☆98Updated last month
- Easy-to-use tutorials for accessing SNOMED APIs within 5 min using various programming languages☆137Updated 11 months ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆97Updated 6 months ago
- Apache cTAKES is a Natural Language Processing (NLP) platform for clinical text.☆110Updated 3 weeks ago
- FHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured informat…☆73Updated 3 weeks ago
- Medical Concept Annotation Tool☆517Updated 5 months ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆85Updated 3 months ago
- System for Medical Concept Extraction and Linking☆426Updated last year
- init☆13Updated last year
- A python package for removing duplicate text in clinical notes or other documents☆39Updated 5 years ago
- Robust de-identification of medical notes using transformer architectures☆56Updated 3 years ago
- A package supporting the conversion from Synthea CSV to OMOP CDM☆119Updated 10 months ago
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…☆29Updated 8 years ago
- HMTL & Javascript for the front end for the SNOMED CT Browser.☆95Updated last month