Open source clinical text de-identification
☆159Aug 20, 2024Updated last year
Alternatives and similar repositories for philter-ucsf
Users that are interested in philter-ucsf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- clinical free text de-identification software☆41Oct 12, 2018Updated 7 years ago
- Master Documentation Repository for OHNLP Projects Related to Coronavirus Disease 2019☆21Dec 8, 2022Updated 3 years ago
- ETUDE (Evaluation Tool for Unstructured Data and Extractions) is a Python-based tool that provides consistent evaluation options across a…☆12Jul 22, 2022Updated 4 years ago
- The repository for code and documentation produced by the N3C Phenotype and Data Acquisition workstream☆66Jul 10, 2025Updated last year
- ☆11Sep 8, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆19Updated this week
- Data Ingestion and Harmonization☆46Mar 17, 2026Updated 4 months ago
- A python library for calculating semantic similarity between patients in N3C☆14Oct 5, 2022Updated 3 years ago
- UCSF Philter for UC☆16Jul 8, 2024Updated 2 years ago
- An R package for evaluating phenotype algorithms.☆22Jun 3, 2026Updated last month
- ☆64Jul 4, 2023Updated 3 years ago
- Python class for reading ECG XML files.☆17Mar 4, 2019Updated 7 years ago
- De-identification of Protected Health Information according to HIPAA Privacy Rule☆41May 30, 2024Updated 2 years ago
- Masking identifiable information from health related documents.☆21Jun 23, 2022Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- OHDSI Ananke - A Tool for Mapping Between OHDSI Concept Identifiers to Unified Medical Language System (UMLS) identifiers☆18Sep 28, 2020Updated 5 years ago
- HL7® FHIR® implementation guide uploader (from IGPack tarfile).☆10Mar 23, 2021Updated 5 years ago
- Runs CQL phenotype definitions against an OMOP repository☆12Apr 14, 2023Updated 3 years ago
- ☆12May 30, 2025Updated last year
- A tool for generating clinical notes using Synthea patient FHIR Bundles☆16Jun 24, 2025Updated last year
- Repository for development of the genomic module of the CDM.☆26Jun 14, 2019Updated 7 years ago
- Tutorial repository for the official MOTOR release☆16Feb 22, 2025Updated last year
- Pilot model and converter for integration of radiology data into OMOP-CDM☆24Nov 1, 2019Updated 6 years ago
- Clinical Research Informatics☆13Aug 23, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆13May 17, 2023Updated 3 years ago
- Way to run Uima Pipelines on Apache Spark☆10Jul 19, 2021Updated 5 years ago
- Clinical Named Entity Recognition system (CliNER) is an open-source natural language processing system for named entity recognition in cl…☆232Aug 14, 2020Updated 5 years ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆37Jan 2, 2024Updated 2 years ago
- Code and simulated data for the paper “Fair Regression for Health Care Spending”☆20Feb 21, 2021Updated 5 years ago
- A JSON-based rest service to process unstructured clinical text through a smart natural language processing system.☆51Dec 16, 2022Updated 3 years ago
- Supporting multi-center research requires combining data created in different data models; this community coordination project aims to pr…☆17Mar 27, 2020Updated 6 years ago
- ☆17Mar 12, 2025Updated last year
- An R package for generating features (covariates) for a cohort using data in the Common Data Model.☆74Jun 28, 2026Updated last month
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Azure Bicep/ARM template to quickly deploy standalone secure research environments following the architecture published at https://docs.m…☆35Sep 26, 2023Updated 2 years ago
- ☆38Mar 27, 2022Updated 4 years ago
- [NeurIPS 2022] Code for "Retrieve, Reason, and Refine: Generating Accurate and Faithful Discharge/Patient Instructions"☆36Jul 28, 2024Updated 2 years ago
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆229Jun 6, 2025Updated last year
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆74Apr 10, 2026Updated 3 months ago
- Library for clinical NLP with spaCy.☆671Jun 4, 2026Updated last month
- Conversion from FHIR HL7 to OMOP CDM☆19Jan 29, 2025Updated last year