som-shahlab / trove
Weakly supervised medical named entity classification
☆72Updated 2 years ago
Alternatives and similar repositories for trove:
Users that are interested in trove are comparing it to the libraries listed below
- ☆97Updated 3 years ago
- Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System☆40Updated 5 years ago
- A project for developing transformer-based models for clinical relation extraction☆127Updated last year
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆116Updated 2 years ago
- ☆147Updated last year
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆146Updated last year
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆79Updated 2 years ago
- ☆91Updated 5 years ago
- ☆26Updated 4 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆163Updated last year
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆158Updated 3 years ago
- Corpus of Online Medical EnTities: the cometA corpus☆50Updated last week
- BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA☆35Updated last year
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆320Updated 3 years ago
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆184Updated last year
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆45Updated 4 years ago
- Weak supervision methods for extracting real world evidence from EHRs☆33Updated 4 years ago
- Transformers for Clinical NLP☆23Updated last month
- PubMed PICO Element Detection Dataset☆56Updated 6 years ago
- Code for the emrQA question answering dataset☆146Updated 3 years ago
- Medical Similarity Dataset creation from SNOMED☆27Updated 2 years ago
- Data and code from our "Inferring Which Medical Treatments Work from Reports of Clinical Trials", NAACL 2019. This work concerns inferrin…☆62Updated 3 years ago
- Python wraper for MetaMap☆170Updated 4 years ago
- A Serverless Text Annotation Tool for Corpus Development☆55Updated 3 weeks ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆79Updated this week
- ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)☆74Updated 2 years ago
- ☆18Updated 11 months ago
- A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…☆36Updated 6 years ago
- Conversion from brat-flavored standoff to CoNLL format☆51Updated 4 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆176Updated 2 years ago