Alternatives and similar repositories for trove

Users that are interested in trove are comparing it to the libraries listed below

• uf-hobi-informatics-lab / ClinicalTransformerNER
  a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms
  ☆147Updated last year
• gmichalo / UmlsBERT
  ☆98Updated 3 years ago
• cambridgeltl / sapbert
  [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.
  ☆187Updated 2 years ago
• uf-hobi-informatics-lab / ClinicalTransformerRelationExtraction
  A project for developing transformer-based models for clinical relation extraction
  ☆127Updated last year
• r-mal / umls-embeddings
  Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System
  ☆39Updated 5 years ago
• GanjinZero / CODER
  CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]
  ☆78Updated 2 years ago
• dchang56 / snomed_kge
  ☆28Updated 4 years ago
• som-shahlab / ehr-rwe
  Weak supervision methods for extracting real world evidence from EHRs
  ☆33Updated 5 years ago
• Machine-Learning-for-Medical-Language / cnlp_transformers
  Transformers for Clinical NLP
  ☆24Updated last week
• Tian312 / PICO_Parser
  A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework
  ☆45Updated 4 years ago
• dmis-lab / BioSyn
  ACL'2020: Biomedical Entity Representations with Synonym Marginalization
  ☆165Updated last year
• LHNCBC / metamaplite
  A near real-time named-entity recognizer
  ☆59Updated 11 months ago
• svjan5 / medtype
  MedType: Improving Medical Entity Linking with Semantic Type Prediction
  ☆116Updated 2 years ago
• suamin / ICD-BERT
  ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)
  ☆74Updated 2 years ago
• jayded / evidence-inference
  Data and code from our "Inferring Which Medical Treatments Work from Reports of Clinical Trials", NAACL 2019. This work concerns inferrin…
  ☆62Updated 3 years ago
• cambridgeltl / cometa
  Corpus of Online Medical EnTities: the cometA corpus
  ☆50Updated 2 months ago
• clinicalml / prancer
  Platform enabling Rapid Annotation for Clinical Entity Recognition
  ☆50Updated 3 years ago
• ncbi-nlp / BioWordVec
  ☆152Updated last year
• CogStack / MedCATtrainer
  A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.
  ☆80Updated last week
• hpi-dhc / xmen
  ✖️MEN - A Modular Toolkit for Cross-Lingual Medical Entity Normalization
  ☆27Updated 4 months ago
• facebookresearch / bio-lm
  We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.
  ☆160Updated 3 years ago
• smitkiri / ehr-relation-extraction
  NER and Relation Extraction from Electronic Health Records (EHR).
  ☆88Updated 3 years ago
• jind11 / PubMed-PICO-Detection
  PubMed PICO Element Detection Dataset
  ☆56Updated 6 years ago
• chanzuckerberg / MedMentions
  A corpus of Biomedical papers annotated with mentions of UMLS entities.
  ☆326Updated 3 years ago
• bepnye / EBM-NLP
  ☆90Updated 5 years ago
• acadTags / Explainable-Automated-Medical-Coding
  Implementation and demo of explainable coding of clinical notes with Hierarchical Label-wise Attention Networks (HLAN)
  ☆61Updated 2 years ago
• babylonhealth / medisim
  Medical Similarity Dataset creation from SNOMED
  ☆27Updated 2 years ago
• bvanaken / clinical-outcome-prediction
  Code for the EACL 2021 Paper: Clinical Outcome Prediction from Admission Notes using Self-Supervised Knowledge Integration
  ☆95Updated 9 months ago
• beamandrew / cui2vec
  ☆54Updated 5 years ago
• AnthonyMRios / pymetamap
  Python wraper for MetaMap
  ☆172Updated 4 years ago