som-shahlab / troveLinks
Weakly supervised medical named entity classification
☆73Updated 2 years ago
Alternatives and similar repositories for trove
Users that are interested in trove are comparing it to the libraries listed below
Sorting:
- ☆100Updated 3 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆336Updated 3 years ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆154Updated 2 years ago
- Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System☆40Updated 5 years ago
- System for Medical Concept Extraction and Linking☆419Updated last year
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆79Updated 3 years ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆116Updated 2 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆173Updated 2 years ago
- ☆152Updated last year
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆205Updated 2 years ago
- ☆220Updated 10 months ago
- A near real-time named-entity recognizer☆61Updated 3 months ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆85Updated last month
- ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)☆77Updated 2 years ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- A project for developing transformer-based models for clinical relation extraction☆130Updated 2 years ago
- Python wraper for MetaMap☆173Updated 5 years ago
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆70Updated 5 months ago
- PubMed PICO Element Detection Dataset☆58Updated 7 years ago
- NER and Relation Extraction from Electronic Health Records (EHR).☆89Updated 3 years ago
- A Serverless Text Annotation Tool for Corpus Development☆57Updated 8 months ago
- Implementation and demo of explainable coding of clinical notes with Hierarchical Label-wise Attention Networks (HLAN)☆62Updated 3 years ago
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.☆297Updated 3 years ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 5 years ago
- ☆55Updated 5 years ago
- ☆74Updated last year
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆46Updated 5 years ago
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆162Updated 4 years ago
- Transformers for Clinical NLP☆25Updated 2 months ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆177Updated 3 years ago