FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algorithms. https://doi.org/10.1093/jamia/ocaa139
☆100Mar 19, 2026Updated 7 months ago
Alternatives and similar repositories for FIDDLE
Users that are interested in FIDDLE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Experiments applying FIDDLE on MIMIC-III and eICU. https://doi.org/10.1093/jamia/ocaa139☆25Jul 12, 2022Updated 4 years ago
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…☆30Nov 18, 2017Updated 8 years ago
- MIMIC-Extract:A Data Extraction, Preprocessing, and Representation Pipeline for MIMIC-III☆492Jul 18, 2024Updated 2 years ago
- A python package for removing duplicate text in clinical notes or other documents☆39Aug 6, 2020Updated 6 years ago
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆100Aug 21, 2026Updated 2 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)☆16Jan 17, 2022Updated 4 years ago
- MIMIC Code Repository: Code shared by the research community for the MIMIC family of databases☆3,423Sep 1, 2026Updated last month
- a Python tool to extract and structure numeric lab test comparison statements from text☆22Jul 31, 2023Updated 3 years ago
- [NeurIPS 2022] Leveraging Factored Action Spaces for Efficient Offline RL in Healthcare. https://arxiv.org/abs/2305.01738☆11Nov 27, 2022Updated 3 years ago
- Resources and documentation for UK Biobank to OMOP CDM v5.3.1 conversion☆10Oct 20, 2020Updated 6 years ago
- Time-Sensitive Deep Learning for ICU Outcome Prediction Without Variable Selection or Cleaning.☆19Jul 6, 2020Updated 6 years ago
- Curated list of awesome papers for electronic health records(EHR) mining, machine learning, and deep learning.☆430Oct 7, 2022Updated 4 years ago
- Medical Concept Annotation Tool☆531Jul 25, 2025Updated last year
- Data-driven discovery of a novel sepsis pre-shock state predicts impending septic shock in the ICU☆17Jan 23, 2021Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆21Dec 14, 2021Updated 4 years ago
- Python package for machine learning for healthcare using a OMOP common data model☆111Jun 17, 2023Updated 3 years ago
- ☆110Aug 18, 2021Updated 5 years ago
- Patient2Vec: A Personalized Interpretable Deep Representation of the Longitudinal Electronic Health Record☆107Nov 27, 2018Updated 7 years ago
- [ICML 2020] Clinician-in-the-Loop Decision Making: Reinforcement Learning with Near-Optimal Set-Valued Policies. https://arxiv.org/abs/20…☆15Dec 8, 2020Updated 5 years ago
- The Medkit-Learn(ing) Environment: Medical Decision Modelling through Simulation (NeurIPS 2021) by Alex J. Chan, Ioana Bica, Alihan Huyuk…☆29Jan 5, 2022Updated 4 years ago
- Code and website related to the eICU Collaborative Research Database☆410Dec 19, 2024Updated last year
- Code for BEHRT: Transformer for Electronic Health Records☆131Apr 6, 2023Updated 3 years ago
- Python suite to construct benchmark machine learning datasets from the MIMIC-III 💊 clinical database.☆893Apr 16, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆77Jun 17, 2025Updated last year
- Resources for the Society of Critical Care Medicine (SCCM) Datathon☆25Sep 24, 2024Updated 2 years ago
- KDD2020 paper; Identifying Sepsis Subphenotypes via Time-Aware Multi-Modal Auto-Encoder☆23Dec 17, 2020Updated 5 years ago
- Source code for a comprehensive analysis of MTL over EHR timeseries data.☆37Apr 11, 2023Updated 3 years ago
- Learning representations for RL in Healthcare under a POMDP assumption☆59Jan 21, 2025Updated last year
- [under development] ETL materials to support proposal for CDM enhancements for clinical trial data☆24Oct 7, 2026Updated 3 weeks ago
- ☆234Sep 1, 2021Updated 5 years ago
- Code repository for BEEP (Biomedical Evidence Enhanced Predictions) clinical outcome prediction system☆26Nov 8, 2023Updated 2 years ago
- ☆11Aug 2, 2019Updated 7 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Medium Article☆11May 15, 2021Updated 5 years ago
- Quantifying biases in BERT embeddings pretrained on MIMIC-III clinical notes☆26Mar 26, 2021Updated 5 years ago
- ICD-10 nternational Statistical Classification of Diseases and Related Health Problems - Ground Truth and some Experimental R Code for N…☆14May 14, 2018Updated 8 years ago
- This is a complete preprocessing, model training, and figure generation repo for "An attention based deep learning model of clinical even…☆76Apr 25, 2024Updated 2 years ago
- ☆51Oct 25, 2023Updated 3 years ago
- A web-based version of the codebook, which generates a concise summary of every variable in a dataset.☆14Apr 9, 2022Updated 4 years ago
- ☆14Jun 1, 2023Updated 3 years ago