Alternatives and similar repositories for metamaplite:

Users that are interested in metamaplite are comparing it to the libraries listed below

• ncbo / umls2rdf
  These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This…
  ☆85Updated 5 months ago
• blpercha / umls-to-graph
  Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.
  ☆41Updated 4 years ago
• DeepPhe / DeepPhe-Release
  Public release of the DeepPhe analytic software
  ☆30Updated 2 years ago
• LHNCBC / SemRep
  ☆65Updated 2 years ago
• OHDSI / NLPTools
  [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis
  ☆32Updated last year
• beamandrew / cui2vec
  ☆52Updated 4 years ago
• OHDSI / KnowledgeBase
  Source code used to develop the OHDSI knowledge base of sources with information relevant for assessing assocations between drugs and hea…
  ☆55Updated 6 years ago
• Tian312 / PICO_Parser
  A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework
  ☆45Updated 4 years ago
• cthoyt / umls_downloader
  Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically
  ☆38Updated 10 months ago
• IHTSDO / snomed-owl-toolkit
  The official SNOMED CT OWL Toolkit. OWL conversion, classification and authoring support.
  ☆100Updated last month
• dchang56 / snomed_kge
  ☆26Updated 4 years ago
• som-shahlab / trove
  Weakly supervised medical named entity classification
  ☆70Updated 2 years ago
• dbmi-pitt / UMLS-Graph
  UMLS Graph database for semantic queries
  ☆20Updated 2 years ago
• gyorilab / gilda
  Grounding of biomedical named entities with contextual disambiguation
  ☆41Updated 3 months ago
• BD2KOnFHIR / NLP2FHIR
  NLP2FHIR: A FHIR-based Clinical Data Normalization Pipeline and Its Applications
  ☆60Updated 2 years ago
• kbogas / medknow
  Medical Relations and Entities Extraction
  ☆36Updated 2 years ago
• CogStack / CogStack-SemEHR
  Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research
  ☆89Updated 2 years ago
• OHNLP / MedTagger
  MedTagger is a light weight clinical NLP system built upon Apache UIMA.
  ☆64Updated 3 months ago
• CogStack / MedCATtrainer
  A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.
  ☆79Updated this week
• gmichalo / UmlsBERT
  ☆96Updated 2 years ago
• r-mal / umls-embeddings
  Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System
  ☆40Updated 5 years ago
• bionlplab / bioc
  Data structures and code to read/write BioC XML and Json.
  ☆31Updated last year
• callahantiff / OMOP2OBO
  OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies
  ☆86Updated last year
• OHDSI / Criteria2Query
  [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…
  ☆64Updated 6 months ago
• ncbo / ncbo_rest_sample_code
  Sample code that demonstrates the use of the NCBO REST services
  ☆42Updated last year
• GanjinZero / CODER
  CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]
  ☆79Updated 2 years ago
• Tian312 / EliIE
  An information extraction system for free-text eligibility criteria
  ☆36Updated 6 years ago
• DiseaseOntology / SymptomOntology
  The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…
  ☆39Updated 8 months ago
• luozhhub / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆24Updated 3 years ago
• AnthonyMRios / pymetamap
  Python wraper for MetaMap
  ☆170Updated 4 years ago