DATEXIS / UMLSParserLinks
Python module to parse UMLS source files
☆19Updated 2 years ago
Alternatives and similar repositories for UMLSParser
Users that are interested in UMLSParser are comparing it to the libraries listed below
Sorting:
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆40Updated last year
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆95Updated 3 weeks ago
- Build a medical knowledge graph based on Unified Language Medical System (UMLS)☆21Updated 3 years ago
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆80Updated 3 years ago
- Code for doing machine learning with various EHRs☆21Updated 2 years ago
- ☆61Updated 2 years ago
- ☆29Updated 3 years ago
- Expert-Curated Oncology Reports to Advance Language Model Inference☆29Updated last year
- Transformers for Clinical NLP☆25Updated 3 weeks ago
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆43Updated last year
- ☆25Updated last year
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆45Updated last year
- A Python Natural Language Processing Toolkit for Medical Text Generation☆81Updated last month
- A python package for removing duplicate text in clinical notes or other documents☆37Updated 4 years ago
- ☆55Updated 5 years ago
- python library for graphical and continuous representations of ICD9 and ICD10 codes☆41Updated 6 months ago
- Implements ChatGPT API via request package.☆45Updated 2 years ago
- PMC-Patients: A Large-scale Dataset of Patient Summaries and Relations for Benchmarking Retrieval-based Clinical Decision Support Systems…☆68Updated last year
- ☆152Updated last year
- all scripts used in gatortron project☆121Updated last year
- Python package for machine learning for healthcare using a OMOP common data model☆110Updated 2 years ago
- General tutorials for the setup and use of MedCAT.☆38Updated last month
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆66Updated 2 months ago
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆38Updated last month
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆63Updated 3 weeks ago
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆69Updated 2 months ago
- A collection of papers on automated medical coding from free-texts☆144Updated 6 months ago
- ☆39Updated 2 years ago
- Weakly supervised medical named entity classification☆73Updated 2 years ago
- ☆38Updated last year