Alternatives and similar repositories for UMLSParser

Users that are interested in UMLSParser are comparing it to the libraries listed below

• rcolinp / clinical_informatics_umls
  An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…
  ☆48Updated last year
• MLD3 / FIDDLE
  FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…
  ☆99Updated 6 months ago
• cthoyt / umls_downloader
  Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically
  ☆41Updated last year
• OHNLP / MedTagger
  MedTagger is a light weight clinical NLP system built upon Apache UIMA.
  ☆70Updated 8 months ago
• dhchenx / umls-graph
  Build a medical knowledge graph based on Unified Language Medical System (UMLS)
  ☆26Updated 4 years ago
• asappresearch / clip
  ☆29Updated 4 years ago
• beamandrew / cui2vec
  ☆55Updated 5 years ago
• GanjinZero / CODER
  CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]
  ☆79Updated 3 years ago
• MadhumitaSushil / OncLLMExtraction
  Expert-Curated Oncology Reports to Advance Language Model Inference
  ☆30Updated last year
• HPIMS / phe2vec
  Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records
  ☆24Updated 5 years ago
• AIM-Harvard / SDoH
  Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…
  ☆49Updated 2 years ago
• MIT-LCP / bloatectomy
  A python package for removing duplicate text in clinical notes or other documents
  ☆39Updated 5 years ago
• CogStack / Foresight
  Deep Generative Modelling of Patient Timelines using Electronic Health Records
  ☆70Updated 6 months ago
• ncbi-nlp / BioWordVec
  ☆152Updated 2 years ago
• cumc-dbmi / cehrbert
  CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks
  ☆44Updated last month
• CogStack / MedCATtutorials
  General tutorials for the setup and use of MedCAT.
  ☆41Updated 7 months ago
• clinicalml / omop-learn
  Python package for machine learning for healthcare using a OMOP common data model
  ☆111Updated 2 years ago
• deepmedicine / BEHRT
  Code for BEHRT: Transformer for Electronic Health Records
  ☆119Updated 2 years ago
• icd-codex / icd-codex
  python library for graphical and continuous representations of ICD9 and ICD10 codes
  ☆41Updated 2 weeks ago
• ncbo / ncbo_rest_sample_code
  Sample code that demonstrates the use of the NCBO REST services
  ☆43Updated last year
• Yale-LILY / Ascle
  A Python Natural Language Processing Toolkit for Medical Text Generation
  ☆84Updated 7 months ago
• luoyuanlab / Clinical-Longformer
  ☆63Updated 2 years ago
• qingyu-qc / gpt_bionlp_benchmark
  ☆25Updated 2 years ago
• ZhiGroup / pytorch_ehr
  source codes based on PyTorch to analyze EHR
  ☆148Updated last year
• dbmi-pitt / UMLS-Graph
  UMLS Graph database for semantic queries
  ☆25Updated 3 years ago
• uf-hobi-informatics-lab / GatorTron
  all scripts used in gatortron project
  ☆130Updated 2 years ago
• Yuqi92 / deep-patient-representation-mimiciii-multitask
  Implementation of Deep Patient Representation of Clinical Notes at Intensive Care Unit for Multi-Task Prediction
  ☆32Updated 6 years ago
• CogStack / MedCATtrainer
  A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.
  ☆85Updated 4 months ago
• thomasnguyen92 / MIMIC-IV-ICD-data-processing
  ☆43Updated 2 years ago
• nyuolab / NYUTron
  public code repository for paper "Health system scale language models are general purpose clinical prediction engines"
  ☆121Updated 2 years ago