Alternatives and similar repositories for SDoH

Users that are interested in SDoH are comparing it to the libraries listed below

• MadhumitaSushil / OncLLMExtraction
  Expert-Curated Oncology Reports to Advance Language Model Inference
  ☆31Updated last year
• CogStack / Foresight
  Deep Generative Modelling of Patient Timelines using Electronic Health Records
  ☆72Updated 7 months ago
• MLD3 / FIDDLE
  FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…
  ☆99Updated 7 months ago
• ZhiGroup / Med-BERT
  Med-BERT, contextualized embedding model for structured EHR data
  ☆312Updated last year
• ZhiGroup / pytorch_ehr
  source codes based on PyTorch to analyze EHR
  ☆149Updated 2 years ago
• nyuolab / NYUTron
  public code repository for paper "Health system scale language models are general purpose clinical prediction engines"
  ☆123Updated 2 years ago
• luoyuanlab / Clinical-Longformer
  ☆63Updated 2 years ago
• som-shahlab / ehrshot-benchmark
  A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)
  ☆209Updated 7 months ago
• uf-hobi-informatics-lab / GatorTron
  all scripts used in gatortron project
  ☆130Updated 2 years ago
• Lybarger / sdoh_extraction
  ☆19Updated 6 months ago
• CogStack / MedCATtutorials
  General tutorials for the setup and use of MedCAT.
  ☆41Updated 8 months ago
• StanfordMIMI / clin-summ
  Clinical text summarization by adapting large language models
  ☆155Updated last year
• som-shahlab / femr
  FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…
  ☆161Updated 2 weeks ago
• clinicalml / omop-learn
  Python package for machine learning for healthcare using a OMOP common data model
  ☆111Updated 2 years ago
• HPIMS / phe2vec
  Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records
  ☆24Updated 5 years ago
• mghassem / medicationCategories
  Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…
  ☆29Updated 8 years ago
• deepmedicine / BEHRT
  Code for BEHRT: Transformer for Electronic Health Records
  ☆120Updated 2 years ago
• asappresearch / clip
  ☆29Updated 4 years ago
• hiesingerlab / almanac-retrieval
  Almanac: Retrieval-Augmented Language Models for Clinical Medicine
  ☆38Updated last year
• starmpcc / Asclepius
  Official Codes for "Publicly Shareable Clinical Large Language Model Built on Synthetic Clinical Notes"
  ☆113Updated last year
• Yale-LILY / Ascle
  A Python Natural Language Processing Toolkit for Medical Text Generation
  ☆84Updated 8 months ago
• lrsoenksen / HAIM
  This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicat…
  ☆140Updated 5 months ago
• bvanaken / clinical-outcome-prediction
  Code for the EACL 2021 Paper: Clinical Outcome Prediction from Admission Notes using Self-Supervised Knowledge Integration
  ☆99Updated last year
• OHDSI / MIMIC
  MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…
  ☆89Updated 2 months ago
• som-shahlab / hf_ehr
  Training HuggingFace models on EHR data
  ☆40Updated 3 months ago
• sajaddarabi / TAPER-EHR
  Patient Code & Text Representation Learning
  ☆19Updated 2 years ago
• Medical-Event-Data-Standard / meds
  Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data
  ☆97Updated 3 months ago
• paulhager / MIMIC-Clinical-Decision-Making-Framework
  Code repository for the framework to engage in clinical decision making task using the MIMIC-CDM dataset.
  ☆49Updated 11 months ago
• uf-hobi-informatics-lab / SDoH_SODA
  ☆18Updated last year
• yhydhx / ChatGPT-API
  Implements ChatGPT API via request package.
  ☆47Updated 2 years ago