Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly improved.
☆30Nov 18, 2017Updated 8 years ago
Alternatives and similar repositories for medicationCategories
Users that are interested in medicationCategories are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A python package for removing duplicate text in clinical notes or other documents☆39Aug 6, 2020Updated 5 years ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆99Mar 19, 2026Updated last week
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆32May 22, 2024Updated last year
- Python wrapper for RxClass API with helper functions to lookup: indications, contraindications, pharmacology, pharmacokinetics, chemical …☆12Jan 12, 2018Updated 8 years ago
- This is the course repository for the Spring 2023 iteration of MACS 30123 "Large-Scale Computing for the Social Sciences" at the Universi…☆13May 16, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- This repository contains the complete source code of the MedTAG annotation tool. MedTAG is a biomedical annotation tool for tagging biome…☆12Jan 1, 2023Updated 3 years ago
- WHOCC ATC-DDD Index WebScraping☆19Mar 12, 2024Updated 2 years ago
- Winners of the SNOMED CT Entity Linking Challenge☆49Apr 11, 2024Updated last year
- MIMIC-Extract:A Data Extraction, Preprocessing, and Representation Pipeline for MIMIC-III☆476Jul 18, 2024Updated last year
- Snowstorm Lite FHIR Terminology Server☆28Updated this week
- Developer project for getting basic API integrations working in under 5 minutes☆11Jan 30, 2026Updated last month
- Path to Medical AGI: Unify Domain-specific Medical LLMs with the Lowest Cost☆39Jun 21, 2023Updated 2 years ago
- Mapping the MIMIC-III database to the OMOP schema☆143Mar 17, 2024Updated 2 years ago
- DeepDive Biomedical Tools☆15Apr 3, 2017Updated 8 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆18Oct 30, 2020Updated 5 years ago
- A Python toolkit for biomedical data integration and harmonization☆19Mar 9, 2026Updated 2 weeks ago
- Compilation of ML/AI Resources for Members of MITxHarvard Women in AI☆11Mar 28, 2022Updated 3 years ago
- Repository for PLSC 40502 - "Data Analysis with Statistical Models"☆13Mar 6, 2025Updated last year
- Implementation for Simulated Bias in Artificial Medical Images (SimBA) framework 🦁☆11Apr 1, 2025Updated 11 months ago
- ☆10Oct 6, 2020Updated 5 years ago
- A Python library to load and analyze the MIMIC III Critical Care Database☆30Dec 8, 2022Updated 3 years ago
- Code and website related to the eICU Collaborative Research Database☆385Dec 19, 2024Updated last year
- Model Wrappers for Projection Methods☆14Feb 10, 2026Updated last month
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- R package for supporting exploratory graphics at http://opensource.nibr.com/xgx☆14Jul 12, 2025Updated 8 months ago
- A self-hosted, real-time web UI + db for exploring your OpenAI API requests / responses.☆18Apr 27, 2023Updated 2 years ago
- ☆13Jan 22, 2026Updated 2 months ago
- Geolocation Inference for Reddit☆13Jun 17, 2024Updated last year
- Corresponding code for experiments described in "Predicting Clinical Outcomes Across Changing Electronic Health Records." Presented at KD…☆11Sep 8, 2017Updated 8 years ago
- Challenge de reco d'émotions sur les visages.☆35May 29, 2015Updated 10 years ago
- ☆10Nov 7, 2022Updated 3 years ago
- Tinker is a parallel-by-default File/Directory Management System with additional interface to NLP and ML libraries☆10Jul 21, 2017Updated 8 years ago
- A Python implementation of the tools from H-CUP (Healthcare Cost and Utilization Project)☆66May 7, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- InspectOmop is a lightweight python 3 package that assists in the extraction of electronic health record(EHR) data from relational databa…☆15Mar 6, 2025Updated last year
- An R package to create metadata structure for ADaM data analysis and reporting☆16Sep 17, 2025Updated 6 months ago
- Based on Thompson sampling with the online bootstrap (Dean Eckles, Maurits Kaptein). http://arxiv.org/abs/1410.4009☆11Dec 30, 2014Updated 11 years ago
- Integration and other testing for tidymodels☆22Mar 16, 2026Updated last week
- Handling, Visualisation and Analysis of Epidemiological Contacts☆16Apr 17, 2025Updated 11 months ago
- MIMIC Code Repository: Code shared by the research community for the MIMIC family of databases☆3,169Nov 10, 2025Updated 4 months ago
- Active learning of GP hyperparameters following Garnett, et al., "Active Learning of Linear Embeddings for Gaussian Processes," (UAI 2014…☆16Aug 4, 2017Updated 8 years ago