Alternatives and similar repositories for phe2vec:

Users that are interested in phe2vec are comparing it to the libraries listed below

• clinicalml / omop-learn
  Python package for machine learning for healthcare using a OMOP common data model
  ☆108Updated last year
• landiisotta / convae_architecture
  ☆40Updated 3 years ago
• CogStack / Foresight
  Deep Generative Modelling of Patient Timelines using Electronic Health Records
  ☆59Updated last year
• ZhiGroup / pytorch_ehr
  source codes based on PyTorch to analyze EHR
  ☆136Updated last year
• deepmedicine / BEHRT
  Code for BEHRT: Transformer for Electronic Health Records
  ☆109Updated 2 years ago
• RuishanLiu / TrialPathfinder
  ☆61Updated 3 years ago
• MLD3 / FIDDLE
  FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…
  ☆92Updated 10 months ago
• som-shahlab / ehr_ml
  Code for doing machine learning with various EHRs
  ☆21Updated 2 years ago
• MASILab / pyPheWAS
  MASI Lab Implementation of PheWAS in Python
  ☆28Updated 5 months ago
• mims-harvard / Clinical-knowledge-embeddings
  Unified Clinical Vocabulary Embeddings for Advancing Precision Medicine
  ☆53Updated this week
• beamandrew / cui2vec
  ☆53Updated 5 years ago
• li-lab-mcgill / mixehr
  ☆16Updated 4 years ago
• deepmedicine / Targeted-BEHRT
  Targeted-BEHRT: Deep Learning for Observational Causal Inference on Longitudinal Electronic Health Records
  ☆20Updated 2 years ago
• Yuqi92 / deep-patient-representation-mimiciii-multitask
  Implementation of Deep Patient Representation of Clinical Notes at Intensive Care Unit for Multi-Task Prediction
  ☆32Updated 5 years ago
• spiros / tofu
  Tofu is a Python tool for generating synthetic UK Biobank data.
  ☆58Updated last year
• OHDSI / MIMIC
  MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…
  ☆76Updated last week
• sajaddarabi / TAPER-EHR
  Patient Code & Text Representation Learning
  ☆20Updated last year
• icd-codex / icd-codex
  python library for graphical and continuous representations of ICD9 and ICD10 codes
  ☆38Updated 3 months ago
• cumc-dbmi / cehrbert
  CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks
  ☆35Updated this week
• CogStack / MedCATtutorials
  General tutorials for the setup and use of MedCAT.
  ☆37Updated last week
• luyang-ai4med / POPDx
  Python implementation of POPDx - Predictions for unseen, rare, and common labels.
  ☆9Updated 10 months ago
• OHNLP / MedTagger
  MedTagger is a light weight clinical NLP system built upon Apache UIMA.
  ☆67Updated 2 weeks ago
• MIT-LCP / bloatectomy
  A python package for removing duplicate text in clinical notes or other documents
  ☆36Updated 4 years ago
• MadhumitaSushil / OncLLMExtraction
  Expert-Curated Oncology Reports to Advance Language Model Inference
  ☆27Updated last year
• celehs / PheCAP
  https://celehs.github.io/PheCAP/
  ☆21Updated 3 years ago
• mghassem / medicationCategories
  Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…
  ☆29Updated 7 years ago
• OHDSI / Criteria2Query
  [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…
  ☆65Updated 9 months ago
• AtlasCUMC / ICD10-ICD9-codes-conversion
  ☆37Updated last year
• yikuan8 / MIMIC-IV-Postgres
  Installing MIMIC-IV in a local Postgres database
  ☆41Updated 3 years ago
• mlhcmit / psets
  Consolidate all problem sets into one repo
  ☆16Updated 2 months ago