HPIMS / phe2vecLinks
Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records
☆24Updated 5 years ago
Alternatives and similar repositories for phe2vec
Users that are interested in phe2vec are comparing it to the libraries listed below
Sorting:
- Python package for machine learning for healthcare using a OMOP common data model☆110Updated 2 years ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆65Updated 5 months ago
- ☆41Updated 3 years ago
- source codes based on PyTorch to analyze EHR☆147Updated last year
- ClinVec: Unified Embeddings of Clinical Codes Enable Knowledge-Grounded AI in Medicine☆72Updated 3 months ago
- Code for BEHRT: Transformer for Electronic Health Records☆116Updated 2 years ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆97Updated 4 months ago
- public code repository for paper "Health system scale language models are general purpose clinical prediction engines"☆118Updated 2 years ago
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆48Updated last year
- MASI Lab Implementation of PheWAS in Python☆28Updated last year
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆70Updated 6 months ago
- ☆65Updated 3 years ago
- Expert-Curated Oncology Reports to Advance Language Model Inference☆30Updated last year
- Tofu is a Python tool for generating synthetic UK Biobank data.☆65Updated 2 years ago
- General tutorials for the setup and use of MedCAT.☆40Updated 5 months ago
- A python package for removing duplicate text in clinical notes or other documents☆38Updated 5 years ago
- ☆16Updated 5 years ago
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆41Updated last month
- PyTrial: A Comprehensive Platform for Artificial Intelligence for Drug Development☆116Updated last year
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…☆29Updated 8 years ago
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆86Updated last week
- ☆55Updated 5 years ago
- a customzable pipeline for information extraction☆18Updated 6 months ago
- Clinical Natural Language Processing using spaCy, scispacy, and medspacy☆100Updated last year
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆71Updated 3 weeks ago
- ☆40Updated last year
- Installing MIMIC-IV in a local Postgres database☆43Updated 4 years ago
- Mapping the MIMIC-III database to the OMOP schema☆143Updated last year
- A Python Natural Language Processing Toolkit for Medical Text Generation☆84Updated 5 months ago
- APLUS ML = A Python Library for Usefulness Simulations of Machine Learning models☆24Updated last month