Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records
☆24Nov 20, 2020Updated 5 years ago
Alternatives and similar repositories for phe2vec
Users that are interested in phe2vec are comparing it to the libraries listed below
Sorting:
- OMOP <-> FHIR mapper☆11Mar 6, 2023Updated 2 years ago
- ☆16Aug 28, 2020Updated 5 years ago
- Tools to create a clinical knowledge graph from biomedical literature. Includes wrappers for NCBI Eutils, cTakes annotator and Neo4J☆16Jun 27, 2024Updated last year
- A python package for discrete-time survival analysis with competing risks☆24Nov 30, 2025Updated 3 months ago
- Contains public materials for students enrolled in MITx: 6.871x, Machine Learning for Healthcare☆20Jun 12, 2021Updated 4 years ago
- source codes based on PyTorch to analyze EHR☆149Jan 22, 2024Updated 2 years ago
- ☆23Oct 31, 2019Updated 6 years ago
- A Serverless Text Annotation Tool for Corpus Development☆59Feb 19, 2025Updated last year
- Framework for image and flow cytometry analysis☆32Jan 3, 2026Updated last month
- Python package for machine learning for healthcare using a OMOP common data model☆111Jun 17, 2023Updated 2 years ago
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆71May 5, 2025Updated 9 months ago
- A library for minimizing the effects of confounding covariates☆15May 28, 2025Updated 9 months ago
- Code for "Graph Neural Network on Electronic Health Records for Predicting Alzheimer’s Disease"☆274Sep 13, 2024Updated last year
- Apache Spark based framework for analysis A/B experiments☆15Nov 3, 2024Updated last year
- Custom Keras layers for implementing multi-dimensional recurrent neural networks (MDRNNs) described in Alex Graves's paper https://arxiv.…☆10Apr 27, 2020Updated 5 years ago
- GRASS GIS module for wildfire simulation wrapping r.ros and r.spread modules☆11Dec 13, 2021Updated 4 years ago
- A python package for removing duplicate text in clinical notes or other documents☆39Aug 6, 2020Updated 5 years ago
- scOntoMatch is an R package which unifies ontology annotation of scRNA-seq datasets to make them comparable across studies☆10Oct 27, 2023Updated 2 years ago
- Convolutional Channel-wise Competitive Learning for the Forward-Forward Algorithm. AAAI 2024☆11Jun 27, 2024Updated last year
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆96Oct 3, 2023Updated 2 years ago
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 8 years ago
- Azure-Sentinel-BYOML☆12Nov 8, 2019Updated 6 years ago
- A MCP Task Server☆11Mar 7, 2025Updated 11 months ago
- Simple videoconferencing service created using Twilio's Programmable Video Group Rooms API☆10May 24, 2018Updated 7 years ago
- This Repository contains the Demo Script, Code for all the sessions which I will be doing in Year 2025☆12Jun 28, 2025Updated 8 months ago
- A lightweight neural network library using resilient propagation (rprop) for adapting the weights☆11Jul 22, 2014Updated 11 years ago
- Scalable genomic analysis pipelines, written in WDL☆11Updated this week
- The JSON file for the ICD-9-CM and ICD-10-CM hierarchy, including diagnosis codes and procedure codes☆13Jan 26, 2023Updated 3 years ago
- ☆10Nov 7, 2022Updated 3 years ago
- Pytorch implementation of Nueral Style transfer☆10Jun 22, 2021Updated 4 years ago
- Vector extraction of data from scientific publications☆10Apr 26, 2023Updated 2 years ago
- Code for analysis of ADNI data☆38Dec 8, 2022Updated 3 years ago
- an unofficial Georgia Tech theme for JupyterLab☆10Jun 29, 2021Updated 4 years ago
- A Jupyter widget for comparing two embeddings with shared labels by their confusion, neighborhoods, and size.☆48Nov 14, 2024Updated last year
- Clinical NLP workshop for ODSC☆40Oct 31, 2019Updated 6 years ago
- Health NLP Examples☆89Nov 8, 2018Updated 7 years ago
- A Python library for rapid prototyping, experimenting, and logging of federated learning using state-of-the-art models and datasets. Buil…☆43Aug 18, 2024Updated last year
- MedAlign is a clinician-generated dataset for instruction following with electronic medical records.☆97May 17, 2025Updated 9 months ago
- PyFed generic framework of benchmark for Federated Learning☆11Oct 9, 2021Updated 4 years ago