HPIMS / phe2vecLinks
Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records
☆24Updated 5 years ago
Alternatives and similar repositories for phe2vec
Users that are interested in phe2vec are comparing it to the libraries listed below
Sorting:
- Python package for machine learning for healthcare using a OMOP common data model☆111Updated 2 years ago
- ☆40Updated 3 years ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆72Updated 7 months ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆99Updated 7 months ago
- Code for BEHRT: Transformer for Electronic Health Records☆120Updated 2 years ago
- source codes based on PyTorch to analyze EHR☆149Updated 2 years ago
- ClinVec: Unified Embeddings of Clinical Codes Enable Knowledge-Grounded AI in Medicine☆77Updated 2 weeks ago
- Tofu is a Python tool for generating synthetic UK Biobank data.☆67Updated 2 years ago
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆49Updated 2 years ago
- public code repository for paper "Health system scale language models are general purpose clinical prediction engines"☆123Updated 2 years ago
- MASI Lab Implementation of PheWAS in Python☆28Updated last year
- ☆55Updated 5 years ago
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆44Updated last month
- A python package for removing duplicate text in clinical notes or other documents☆39Updated 5 years ago
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆71Updated 9 months ago
- General tutorials for the setup and use of MedCAT.☆41Updated 8 months ago
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆89Updated this week
- ☆15Updated 5 years ago
- Electronic Health Record Analysis with Python.☆329Updated this week
- Expert-Curated Oncology Reports to Advance Language Model Inference☆31Updated last year
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆97Updated 3 months ago
- Targeted-BEHRT: Deep Learning for Observational Causal Inference on Longitudinal Electronic Health Records☆19Updated 2 years ago
- ☆67Updated 4 years ago
- Replication of the arterial line study in MIMIC-IV☆75Updated 4 years ago
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…☆29Updated 8 years ago
- ☆41Updated last year
- Patient Code & Text Representation Learning☆19Updated 2 years ago
- python library for graphical and continuous representations of ICD9 and ICD10 codes☆41Updated last month
- APLUS ML = A Python Library for Usefulness Simulations of Machine Learning models☆26Updated 3 months ago
- AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916☆197Updated 3 weeks ago