cthoyt / umls_downloader
Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically
☆38Updated 11 months ago
Alternatives and similar repositories for umls_downloader:
Users that are interested in umls_downloader are comparing it to the libraries listed below
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆43Updated 11 months ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 4 years ago
- Grounding of biomedical named entities with contextual disambiguation☆43Updated 4 months ago
- Python module to parse UMLS source files☆19Updated 2 years ago
- ☆65Updated 2 years ago
- UMLS Graph database for semantic queries☆20Updated 2 years ago
- Build a medical knowledge graph based on Unified Language Medical System (UMLS)☆20Updated 3 years ago
- Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)☆40Updated last week
- A near real-time named-entity recognizer☆59Updated 9 months ago
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆86Updated last year
- ☆26Updated 4 years ago
- The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…☆41Updated 9 months ago
- mOWL: Machine Learning library with Ontologies☆63Updated last month
- Data structures and code to read/write BioC XML and Json.☆31Updated last year
- Public release of the DeepPhe analytic software☆30Updated 2 years ago
- Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)☆16Updated 3 years ago
- Expert-Curated Oncology Reports to Advance Language Model Inference☆27Updated 10 months ago
- a module to calculate the MeSH similarity☆25Updated 3 years ago
- Turning Ontologies Plus Annotation Properties into Vectors☆35Updated 4 years ago
- AIONER☆52Updated 7 months ago
- Biomedical Term Annotator☆9Updated 2 weeks ago
- a module to calculate the MeSH similarity☆26Updated 3 years ago
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Updated 4 years ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆55Updated last year
- ☆52Updated 4 years ago
- These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This…☆86Updated 6 months ago
- ☆24Updated 4 years ago
- Biomedical Entity Linking Benchmark☆11Updated 3 months ago
- Medical action ontology☆55Updated 2 months ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆79Updated this week