Alternatives and similar repositories for Criteria2Query:

Users that are interested in Criteria2Query are comparing it to the libraries listed below

• MIT-LCP / mimic-omop
  Mapping the MIMIC-III database to the OMOP schema
  ☆132Updated last year
• clinicalml / omop-learn
  Python package for machine learning for healthcare using a OMOP common data model
  ☆107Updated last year
• OHNLP / MedTagger
  MedTagger is a light weight clinical NLP system built upon Apache UIMA.
  ☆64Updated 4 months ago
• OHDSI / Apollo
  [Under development] Assessment of Pre-trained Observational Large Language-models in OHDSI (APOLLO)
  ☆14Updated 9 months ago
• lisavirginia / clinical-abbreviations
  ☆64Updated 4 years ago
• OHDSI / MIMIC
  MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…
  ☆76Updated last month
• OHNLP / N3C-NLP-Documentation
  Master Documentation Repository for OHNLP Projects Related to Coronavirus Disease 2019
  ☆21Updated 2 years ago
• beamandrew / cui2vec
  ☆53Updated 4 years ago
• callahantiff / OMOP2OBO
  OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies
  ☆86Updated last year
• OHDSI / NLPTools
  [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis
  ☆32Updated last year
• CogStack / CogStack-SemEHR
  Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research
  ☆89Updated 2 years ago
• National-Clinical-Cohort-Collaborative / Phenotype_Data_Acquisition
  The repository for code and documentation produced by the N3C Phenotype and Data Acquisition workstream
  ☆62Updated last year
• kdpsingh / clinspacy
  Clinical Natural Language Processing using spaCy, scispacy, and medspacy
  ☆99Updated 10 months ago
• OHDSI / PhenotypeLibrary
  A repository to store, organize and maintain the content of the OHDSI Phenotype library. OHDSI Forum post https://forums.ohdsi.org/t/ohds…
  ☆43Updated 5 months ago
• OHDSI / CohortDiagnostics
  An R package for performing various cohort diagnostics.
  ☆43Updated this week
• LHNCBC / metamaplite
  A near real-time named-entity recognizer
  ☆59Updated 9 months ago
• OHDSI / PheValuator
  An R package for evaluating phenotype algorithms.
  ☆17Updated 5 months ago
• gmichalo / UmlsBERT
  ☆97Updated 3 years ago
• BCHSI / philter-ucsf
  Open source clinical text de-identification
  ☆125Updated 7 months ago
• OHDSI / OncologyWG
  Oncology Working Group Repository
  ☆56Updated last month
• CogStack / MedCATtrainer
  A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.
  ☆79Updated this week
• OHNLP / MedTator
  A Serverless Text Annotation Tool for Corpus Development
  ☆55Updated last month
• ltscomputingllc / faersdbstats
  Generate safety signal statistics from FDA FAERS data
  ☆49Updated 9 months ago
• AIM-Harvard / SDoH
  Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…
  ☆43Updated last year
• DeepPhe / DeepPhe-Release
  Public release of the DeepPhe analytic software
  ☆30Updated 2 years ago
• CogStack / MedCATtutorials
  General tutorials for the setup and use of MedCAT.
  ☆37Updated 2 months ago
• BD2KOnFHIR / NLP2FHIR
  NLP2FHIR: A FHIR-based Clinical Data Normalization Pipeline and Its Applications
  ☆60Updated 2 years ago
• MadhumitaSushil / OncLLMExtraction
  Expert-Curated Oncology Reports to Advance Language Model Inference
  ☆27Updated 11 months ago
• uf-hobi-informatics-lab / NLPreprocessing
  A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization
  ☆30Updated 10 months ago
• dermatologist / pyomop
  Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries!
  ☆43Updated 2 weeks ago