OHDSI / Criteria2QueryLinks
[In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed against OMOP CDM
☆69Updated this week
Alternatives and similar repositories for Criteria2Query
Users that are interested in Criteria2Query are comparing it to the libraries listed below
Sorting:
- Mapping the MIMIC-III database to the OMOP schema☆137Updated last year
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆69Updated 2 months ago
- Open source clinical text de-identification☆131Updated 10 months ago
- ☆55Updated 5 years ago
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆89Updated last year
- Python package for machine learning for healthcare using a OMOP common data model☆110Updated 2 years ago
- ☆15Updated 3 weeks ago
- The repository for code and documentation produced by the N3C Phenotype and Data Acquisition workstream☆65Updated last week
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆33Updated last year
- ☆64Updated 4 years ago
- Oncology Working Group Repository☆57Updated 2 weeks ago
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆80Updated 2 weeks ago
- An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.☆199Updated last month
- Clinical Natural Language Processing using spaCy, scispacy, and medspacy☆100Updated last year
- [Under development] Assessment of Pre-trained Observational Large Language-models in OHDSI (APOLLO)☆14Updated last year
- ☆152Updated last year
- Medical Concept Annotation Tool☆503Updated last week
- System for Medical Concept Extraction and Linking☆408Updated 11 months ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- ☆218Updated 7 months ago
- Library for converting clinical trial eligibility criteria to a machine-readable format.☆173Updated 3 years ago
- Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.☆243Updated this week
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆45Updated last year
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆95Updated 3 weeks ago
- A repository of code samples in various languages that show how to use the UMLS Terminology Services REST API☆173Updated 2 years ago
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆31Updated last year
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…☆29Updated 7 years ago
- ☆98Updated 3 years ago
- ETL Tool for converting datasets to OMOP CDM☆33Updated 2 years ago
- [in development]☆37Updated 4 years ago