[In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed against OMOP CDM
☆80Mar 1, 2026Updated 7 months ago
Alternatives and similar repositories for Criteria2Query
Users that are interested in Criteria2Query are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Oct 11, 2022Updated 4 years ago
- Library for converting clinical trial eligibility criteria to a machine-readable format.☆186Mar 22, 2022Updated 4 years ago
- Public release of the DeepPhe analytic software☆31Jul 22, 2026Updated 2 months ago
- A repository to store, organize and maintain the content of the OHDSI Phenotype library. OHDSI Forum post https://forums.ohdsi.org/t/ohds…☆60Apr 9, 2026Updated 6 months ago
- A package supporting the conversion from Synthea CSV to OMOP CDM☆130Mar 23, 2026Updated 6 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- An R package for interfacing with a WebAPI instance☆10Updated this week
- An R package for evaluating phenotype algorithms.☆22Oct 8, 2026Updated last week
- R Package to support quality control inspection of an OMOP-CDM instance☆13Feb 13, 2025Updated last year
- An R package for performing various cohort diagnostics.☆55Aug 26, 2026Updated last month
- Semantic search engine for OHDSI vocabulary☆21Sep 30, 2026Updated 2 weeks ago
- A generator of synthetic psychiatric notes.☆18Apr 22, 2020Updated 6 years ago
- A near real-time named-entity recognizer☆66Sep 1, 2026Updated last month
- An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/☆107Mar 28, 2024Updated 2 years ago
- ☆23Oct 31, 2019Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆19Updated this week
- Source code for KDD 2020 paper COMPOSE: Cross-Modal Pseudo-Siamese Network for Patient Trial Matching.☆20Aug 26, 2020Updated 6 years ago
- Use machine learning to find patterns of similar eligibility protocol criteria for clinical trials☆20Jan 9, 2019Updated 7 years ago
- ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data☆328Sep 16, 2026Updated last month
- A Docker container that includes the OHDSI WebAPI (running in Apache Tomcat) and the OHDSI web applications.☆10Nov 2, 2022Updated 3 years ago
- Generate realistic and complete synthetic test data for US Core v3.1.0☆15Jan 10, 2024Updated 2 years ago
- omopcept : an R package to access OMOP conCEPTs (no cons!) and flexible tidyverse compatible R functions for querying and visualising.☆16Jul 1, 2025Updated last year
- IAN: An Intelligent System for Omics Data Analysis and Discovery☆20Feb 23, 2026Updated 7 months ago
- [under development] ETL materials to support proposal for CDM enhancements for clinical trial data☆24Oct 7, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code and data for TrialGPT.☆174Jan 24, 2025Updated last year
- Health Analytics Data-to-Evidence Suite (HADES): A collection of R packages for performing analytics against the Common Data Model.☆30Oct 5, 2026Updated last week
- Master Documentation Repository for OHNLP Projects Related to Coronavirus Disease 2019☆21Dec 8, 2022Updated 3 years ago
- CEPICS: a comparison and evaluation platform for integration methods in cancer subtyping☆10Jun 6, 2020Updated 6 years ago
- [ISMB 2024] Self-BioRAG: Improving Medical Reasoning through Retrieval and Self-Reflection with Retrieval-Augmented Large Language Models☆64Apr 4, 2024Updated 2 years ago
- Training materials for Vocabulary & CDM Tutorial.☆23Sep 13, 2019Updated 7 years ago
- This is a LaTeX template for JAMIA.☆29May 4, 2024Updated 2 years ago
- Clinical Research Informatics☆13Sep 2, 2026Updated last month
- Open source engine for matching cancer patients to precision medicine clinical trials (V2).☆43Dec 1, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).☆157Mar 12, 2023Updated 3 years ago
- A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list☆39Jul 25, 2023Updated 3 years ago
- Dynamic visualization of Electronic Health Record data in the OMOP framework☆31May 28, 2021Updated 5 years ago
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆47Oct 15, 2020Updated 6 years ago
- SmallK: very fast data clustering tools☆13Apr 3, 2019Updated 7 years ago
- Life & Times of a Reproducible Clinical Project☆15Jan 15, 2019Updated 7 years ago
- Machine reading system for World Modelers☆38Feb 13, 2024Updated 2 years ago