Alternatives and similar repositories for Criteria2Query

Users that are interested in Criteria2Query are comparing it to the libraries listed below

• MIT-LCP / mimic-omop
  Mapping the MIMIC-III database to the OMOP schema
  ☆144Updated last year
• OHNLP / MedTagger
  MedTagger is a light weight clinical NLP system built upon Apache UIMA.
  ☆71Updated 9 months ago
• BCHSI / philter-ucsf
  Open source clinical text de-identification
  ☆147Updated last year
• OHDSI / OncologyWG
  Oncology Working Group Repository
  ☆59Updated last month
• CogStack / MedCAT
  Medical Concept Annotation Tool
  ☆522Updated 6 months ago
• beamandrew / cui2vec
  ☆55Updated 5 years ago
• lisavirginia / clinical-abbreviations
  ☆66Updated 4 years ago
• clinicalml / omop-learn
  Python package for machine learning for healthcare using a OMOP common data model
  ☆111Updated 2 years ago
• CogStack / CogStack-SemEHR
  Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research
  ☆88Updated 3 years ago
• callahantiff / OMOP2OBO
  OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies
  ☆96Updated 2 years ago
• CogStack / MedCATtutorials
  General tutorials for the setup and use of MedCAT.
  ☆42Updated 8 months ago
• ncbo / ncbo_rest_sample_code
  Sample code that demonstrates the use of the NCBO REST services
  ☆44Updated 2 years ago
• OHDSI / MIMIC
  MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…
  ☆89Updated this week
• drivendataorg / snomed-ct-entity-linking
  Winners of the SNOMED CT Entity Linking Challenge
  ☆44Updated last year
• AIM-Harvard / SDoH
  Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…
  ☆49Updated 2 years ago
• Georgetown-IR-Lab / QuickUMLS
  System for Medical Concept Extraction and Linking
  ☆431Updated last year
• OHDSI / PatientLevelPrediction
  An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.
  ☆212Updated last week
• OHDSI / NLPTools
  [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis
  ☆34Updated 2 years ago
• mghassem / medicationCategories
  Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…
  ☆29Updated 8 years ago
• LHNCBC / metamaplite
  A near real-time named-entity recognizer
  ☆63Updated last week
• kormilitzin / med7
  ☆221Updated last year
• susom / tide
  ☆16Updated 7 months ago
• ncbi-nlp / BioWordVec
  ☆153Updated 2 years ago
• National-Clinical-Cohort-Collaborative / Phenotype_Data_Acquisition
  The repository for code and documentation produced by the N3C Phenotype and Data Acquisition workstream
  ☆66Updated 6 months ago
• kdpsingh / clinspacy
  Clinical Natural Language Processing using spaCy, scispacy, and medspacy
  ☆101Updated last year
• OHNLP / N3C-NLP-Documentation
  Master Documentation Repository for OHNLP Projects Related to Coronavirus Disease 2019
  ☆21Updated 3 years ago
• MLD3 / FIDDLE
  FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…
  ☆99Updated 7 months ago
• OHDSI / Athena
  Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM
  ☆72Updated 5 months ago
• OHNLP / MedTator
  A Serverless Text Annotation Tool for Corpus Development
  ☆59Updated 11 months ago
• ltscomputingllc / faersdbstats
  Generate safety signal statistics from FDA FAERS data
  ☆52Updated last year