Alternatives and similar repositories for DeepPhe-Release:

Users that are interested in DeepPhe-Release are comparing it to the libraries listed below

• bionlplab / bioc
  Data structures and code to read/write BioC XML and Json.
  ☆31Updated last year
• OHDSI / KnowledgeBase
  Source code used to develop the OHDSI knowledge base of sources with information relevant for assessing assocations between drugs and hea…
  ☆56Updated 6 years ago
• OHDSI / NLPTools
  [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis
  ☆32Updated last year
• beamandrew / cui2vec
  ☆52Updated 4 years ago
• LHNCBC / metamaplite
  A near real-time named-entity recognizer
  ☆59Updated 7 months ago
• ncbo / ncbo_rest_sample_code
  Sample code that demonstrates the use of the NCBO REST services
  ☆41Updated last year
• blpercha / umls-to-graph
  Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.
  ☆40Updated 4 years ago
• sebastianGehrmann / phenotyping
  This repository contains data and code for the paper"Comparing deep learning and concept extraction based methods for patient phenotyping…
  ☆21Updated 6 years ago
• Tian312 / EliIE
  An information extraction system for free-text eligibility criteria
  ☆36Updated 6 years ago
• greenelab / pubtator
  Retrieve and process PubTator annotations
  ☆43Updated last year
• luozhhub / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆24Updated 3 years ago
• 2mh / PyBioC
  Python library for work with BioCreative files
  ☆13Updated 6 years ago
• lasigeBioTM / IHP
  Identification of Human Phenotype Entities
  ☆11Updated 6 years ago
• gyorilab / gilda
  Grounding of biomedical named entities with contextual disambiguation
  ☆39Updated 2 months ago
• OHNLP / MedTator
  A Serverless Text Annotation Tool for Corpus Development
  ☆53Updated last month
• ncbi-nlp / PhenoTagger
  PhenoTagger
  ☆54Updated 11 months ago
• Tian312 / PICO_Parser
  A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework
  ☆45Updated 4 years ago
• ncbo / umls2rdf
  These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This…
  ☆84Updated 4 months ago
• CogStack / CogStack-SemEHR
  Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research
  ☆89Updated 2 years ago
• UTHealth-CCB / clamp-support
  Clinical Language Annotation Modeling and Processing toolkit
  ☆16Updated 8 years ago
• ncbi-nlp / DeepRel
  A convolutional neural network model for relation extraction.
  ☆13Updated last year
• LHNCBC / SemRep
  ☆64Updated 2 years ago
• p2 / ClinicalTrialsNLP
  Classes for ClinicalTrials.gov related projects
  ☆48Updated 5 years ago
• callahantiff / OMOP2OBO
  OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies
  ☆86Updated last year
• greenelab / snorkeling
  Extracting biomedical relationships from literature with Snorkel 🏊
  ☆59Updated 3 years ago
• OHNLP / MedTagger
  MedTagger is a light weight clinical NLP system built upon Apache UIMA.
  ☆64Updated 2 months ago
• jakelever / pubrunner
  A framework for keeping biomedical text mining result up-to-date
  ☆41Updated 4 years ago
• BD2KOnFHIR / NLP2FHIR
  NLP2FHIR: A FHIR-based Clinical Data Normalization Pipeline and Its Applications
  ☆60Updated 2 years ago
• BMDSoftware / neji
  Flexible and powerful platform for biomedical information extraction from text
  ☆39Updated 7 years ago