DeepPhe / DeepPhe-ReleaseLinks
Public release of the DeepPhe analytic software
☆30Updated this week
Alternatives and similar repositories for DeepPhe-Release
Users that are interested in DeepPhe-Release are comparing it to the libraries listed below
Sorting:
- Data structures and code to read/write BioC XML and Json.☆33Updated last year
- A near real-time named-entity recognizer☆61Updated 3 weeks ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- An information extraction system for free-text eligibility criteria☆37Updated 6 years ago
- ☆55Updated 5 years ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆33Updated last year
- Source code used to develop the OHDSI knowledge base of sources with information relevant for assessing assocations between drugs and hea…☆55Updated 6 years ago
- Classes for ClinicalTrials.gov related projects☆47Updated 5 years ago
- Sample code that demonstrates the use of the NCBO REST services☆44Updated last year
- Retrieve and process PubTator annotations☆44Updated last year
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 4 years ago
- Health knowledge graph for 157 diseases and 491 symptoms, learned from >270,000 patients' data☆102Updated 4 years ago
- Identification of Human Phenotype Entities☆11Updated 6 years ago
- ☆99Updated 3 years ago
- Python wraper for MetaMap☆174Updated 5 years ago
- ☆68Updated 3 years ago
- Mapping the MIMIC-III database to the OMOP schema☆139Updated last year
- A Serverless Text Annotation Tool for Corpus Development☆56Updated 5 months ago
- A convolutional neural network model for relation extraction.☆13Updated 2 years ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆69Updated 3 weeks ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆40Updated last year
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Updated 5 years ago
- https://celehs.github.io/PheCAP/☆21Updated 4 years ago
- Python library for work with BioCreative files☆13Updated 7 years ago
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆89Updated last year
- ☆152Updated last year
- Basic Python 3 tools to interact with UMLS lexica☆123Updated 6 years ago
- These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This…☆85Updated 11 months ago
- Grounding of biomedical named entities with contextual disambiguation☆45Updated 2 weeks ago