OHDSI / MIMICLinks
MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitted to critical care units at a large tertiary care hospital. This repository contains the ETL to the OMOP CDM.
☆83Updated 2 weeks ago
Alternatives and similar repositories for MIMIC
Users that are interested in MIMIC are comparing it to the libraries listed below
Sorting:
- Mapping the MIMIC-III database to the OMOP schema☆141Updated last year
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆75Updated last month
- Python package for machine learning for healthcare using a OMOP common data model☆110Updated 2 years ago
- AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916☆185Updated 8 months ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆96Updated 2 months ago
- An R package for performing various cohort diagnostics.☆47Updated 2 weeks ago
- Oncology Working Group Repository☆57Updated 3 weeks ago
- A repository to store, organize and maintain the content of the OHDSI Phenotype library. OHDSI Forum post https://forums.ohdsi.org/t/ohds…☆47Updated 5 months ago
- [under development] Tools for ETL into OMOP CDM and deployment of OHDSI toolstack☆38Updated last year
- Open source clinical text de-identification☆141Updated last year
- A package supporting the conversion from Synthea CSV to OMOP CDM☆115Updated 6 months ago
- ETL Tool for converting datasets to OMOP CDM☆33Updated 2 years ago
- Course materials for OHDSI ETL tutorial☆52Updated 10 months ago
- Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM☆69Updated 3 weeks ago
- Installing MIMIC-IV in a local Postgres database☆42Updated 4 years ago
- Winners of the SNOMED CT Entity Linking Challenge☆41Updated last year
- A version of MIMIC-IV in FHIR☆46Updated 10 months ago
- ☆16Updated 3 months ago
- [Under development] Assessment of Pre-trained Observational Large Language-models in OHDSI (APOLLO)☆14Updated last year
- Code for BEHRT: Transformer for Electronic Health Records☆114Updated 2 years ago
- ☆12Updated 4 months ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆63Updated 3 months ago
- An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.☆206Updated this week
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆69Updated 4 months ago
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆155Updated this week
- Usagi is an application to help create mappings between coding systems and the Vocabulary standard concepts.☆100Updated last year
- source codes based on PyTorch to analyze EHR☆147Updated last year
- The repository for code and documentation produced by the N3C Phenotype and Data Acquisition workstream☆64Updated 2 months ago
- A collection of ETLs from common data formats to Medical Event Data Standard☆33Updated last month
- Data Ingestion and Harmonization☆45Updated last week