OHDSI / MIMICLinks
MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitted to critical care units at a large tertiary care hospital. This repository contains the ETL to the OMOP CDM.
☆84Updated 3 weeks ago
Alternatives and similar repositories for MIMIC
Users that are interested in MIMIC are comparing it to the libraries listed below
Sorting:
- Mapping the MIMIC-III database to the OMOP schema☆142Updated last year
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆81Updated 2 months ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆96Updated 3 months ago
- Python package for machine learning for healthcare using a OMOP common data model☆110Updated 2 years ago
- Installing MIMIC-IV in a local Postgres database☆42Updated 4 years ago
- Winners of the SNOMED CT Entity Linking Challenge☆41Updated last year
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆64Updated 3 months ago
- AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916☆185Updated 8 months ago
- Oncology Working Group Repository☆57Updated 3 weeks ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆69Updated 3 weeks ago
- An R package for performing various cohort diagnostics.☆47Updated last month
- [under development] Tools for ETL into OMOP CDM and deployment of OHDSI toolstack☆38Updated last year
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆155Updated this week
- A version of MIMIC-IV in FHIR☆47Updated 11 months ago
- Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM☆70Updated last month
- Course materials for OHDSI ETL tutorial☆52Updated this week
- Code for BEHRT: Transformer for Electronic Health Records☆116Updated 2 years ago
- Open source clinical text de-identification☆141Updated last year
- A repository to store, organize and maintain the content of the OHDSI Phenotype library. OHDSI Forum post https://forums.ohdsi.org/t/ohds…☆48Updated 6 months ago
- A package supporting the conversion from Synthea CSV to OMOP CDM☆115Updated 7 months ago
- A collection of ETLs from common data formats to Medical Event Data Standard☆35Updated 2 months ago
- ETL Tool for converting datasets to OMOP CDM☆33Updated 2 years ago
- ☆16Updated 3 months ago
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆69Updated 5 months ago
- An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.☆209Updated this week
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆39Updated last week
- source codes based on PyTorch to analyze EHR☆147Updated last year
- Deprecated. For the latest MIMIC-IV code, please refer to: https://github.com/MIT-LCP/mimic-code☆289Updated 4 years ago
- Med-BERT, contextualized embedding model for structured EHR data☆306Updated last year
- General tutorials for the setup and use of MedCAT.☆40Updated 4 months ago