OHDSI / MIMICLinks
MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitted to critical care units at a large tertiary care hospital. This repository contains the ETL to the OMOP CDM.
☆89Updated 2 months ago
Alternatives and similar repositories for MIMIC
Users that are interested in MIMIC are comparing it to the libraries listed below
Sorting:
- Mapping the MIMIC-III database to the OMOP schema☆143Updated last year
- Python package for machine learning for healthcare using a OMOP common data model☆111Updated 2 years ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆96Updated 2 months ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆99Updated 6 months ago
- AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916☆195Updated last week
- Installing MIMIC-IV in a local Postgres database☆44Updated 4 years ago
- Oncology Working Group Repository☆59Updated 2 weeks ago
- A version of MIMIC-IV in FHIR☆50Updated last year
- ETL Tool for converting datasets to OMOP CDM☆35Updated 3 years ago
- Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM☆72Updated 4 months ago
- [under development] Tools for ETL into OMOP CDM and deployment of OHDSI toolstack☆38Updated 2 years ago
- A package supporting the conversion from Synthea CSV to OMOP CDM☆120Updated 10 months ago
- Code for BEHRT: Transformer for Electronic Health Records☆119Updated 2 years ago
- A repository to store, organize and maintain the content of the OHDSI Phenotype library. OHDSI Forum post https://forums.ohdsi.org/t/ohds…☆50Updated 3 months ago
- Open source clinical text de-identification☆147Updated last year
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆161Updated last month
- An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.☆212Updated this week
- An R package for performing various cohort diagnostics.☆48Updated 4 months ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆73Updated last week
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆70Updated 7 months ago
- ☆16Updated 7 months ago
- A collection of ETLs from common data formats to Medical Event Data Standard☆38Updated 5 months ago
- Replication of the arterial line study in MIMIC-IV☆75Updated 4 years ago
- Course materials for OHDSI ETL tutorial☆53Updated 3 months ago
- Deprecated. For the latest MIMIC-IV code, please refer to: https://github.com/MIT-LCP/mimic-code☆291Updated 4 years ago
- Winners of the SNOMED CT Entity Linking Challenge☆43Updated last year
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…☆29Updated 8 years ago
- source codes based on PyTorch to analyze EHR☆149Updated last year
- Website for the MIMIC Critical Care Database (currently version MIMIC-III)☆124Updated 3 months ago
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆44Updated last month