OHDSI / MIMIC
MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitted to critical care units at a large tertiary care hospital. This repository contains the ETL to the OMOP CDM.
☆76Updated this week
Alternatives and similar repositories for MIMIC
Users that are interested in MIMIC are comparing it to the libraries listed below
Sorting:
- Mapping the MIMIC-III database to the OMOP schema☆134Updated last year
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆59Updated this week
- A version of MIMIC-IV in FHIR☆42Updated 6 months ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆93Updated 11 months ago
- Course materials for OHDSI ETL tutorial☆46Updated 6 months ago
- [under development] Tools for ETL into OMOP CDM and deployment of OHDSI toolstack☆36Updated last year
- A collection of ETLs from common data formats to Medical Event Data Standard☆29Updated 3 weeks ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆62Updated last year
- Python package for machine learning for healthcare using a OMOP common data model☆108Updated last year
- An R package for performing various cohort diagnostics.☆45Updated 3 weeks ago
- A repository to store, organize and maintain the content of the OHDSI Phenotype library. OHDSI Forum post https://forums.ohdsi.org/t/ohds…☆44Updated last month
- [Under development] Assessment of Pre-trained Observational Large Language-models in OHDSI (APOLLO)☆14Updated 10 months ago
- AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916☆176Updated 3 months ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆67Updated 9 months ago
- Code for BEHRT: Transformer for Electronic Health Records☆109Updated 2 years ago
- Oncology Working Group Repository☆56Updated this week
- ETL Tool for converting datasets to OMOP CDM☆31Updated 2 years ago
- A package supporting the conversion from Synthea CSV to OMOP CDM☆109Updated 2 months ago
- ☆12Updated this week
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆141Updated 3 weeks ago
- Open source clinical text de-identification☆127Updated 8 months ago
- ☆15Updated 5 months ago
- source codes based on PyTorch to analyze EHR☆136Updated last year
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Updated 4 years ago
- OMOP standardization pipeline for ICU databases☆41Updated 2 months ago
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆87Updated last year
- Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM☆60Updated 2 months ago
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆67Updated last week
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆35Updated this week
- Data Ingestion and Harmonization☆44Updated 3 weeks ago