OHDSI / MIMICLinks
MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitted to critical care units at a large tertiary care hospital. This repository contains the ETL to the OMOP CDM.
☆80Updated 2 weeks ago
Alternatives and similar repositories for MIMIC
Users that are interested in MIMIC are comparing it to the libraries listed below
Sorting:
- Mapping the MIMIC-III database to the OMOP schema☆136Updated last year
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆62Updated last month
- Python package for machine learning for healthcare using a OMOP common data model☆108Updated 2 years ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆94Updated last year
- A version of MIMIC-IV in FHIR☆42Updated 7 months ago
- A collection of ETLs from common data formats to Medical Event Data Standard☆31Updated 2 weeks ago
- [under development] Tools for ETL into OMOP CDM and deployment of OHDSI toolstack☆37Updated last year
- Course materials for OHDSI ETL tutorial☆48Updated 8 months ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆63Updated last week
- Oncology Working Group Repository☆56Updated this week
- ETL Tool for converting datasets to OMOP CDM☆33Updated 2 years ago
- A repository to store, organize and maintain the content of the OHDSI Phenotype library. OHDSI Forum post https://forums.ohdsi.org/t/ohds…☆47Updated 2 months ago
- A package supporting the conversion from Synthea CSV to OMOP CDM☆112Updated 4 months ago
- An R package for performing various cohort diagnostics.☆46Updated last week
- [Under development] Assessment of Pre-trained Observational Large Language-models in OHDSI (APOLLO)☆14Updated last year
- source codes based on PyTorch to analyze EHR☆140Updated last year
- ☆15Updated this week
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆69Updated last month
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆35Updated last month
- FHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured informat…☆66Updated 5 months ago
- ☆12Updated last month
- Code for BEHRT: Transformer for Electronic Health Records☆111Updated 2 years ago
- Targeted-BEHRT: Deep Learning for Observational Causal Inference on Longitudinal Electronic Health Records☆20Updated 2 years ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆68Updated last week
- Open source clinical text de-identification☆129Updated 10 months ago
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Updated 4 years ago
- ☆40Updated 3 years ago
- Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM☆61Updated 3 months ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆144Updated this week