clinicalml / omop-learnLinks
Python package for machine learning for healthcare using a OMOP common data model
☆111Updated 2 years ago
Alternatives and similar repositories for omop-learn
Users that are interested in omop-learn are comparing it to the libraries listed below
Sorting:
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆99Updated 7 months ago
- Mapping the MIMIC-III database to the OMOP schema☆144Updated last year
- ☆40Updated 3 years ago
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Updated 5 years ago
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆89Updated this week
- Code for BEHRT: Transformer for Electronic Health Records☆120Updated 2 years ago
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…☆29Updated 8 years ago
- ☆55Updated 5 years ago
- source codes based on PyTorch to analyze EHR☆149Updated 2 years ago
- AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916☆197Updated last month
- Installing MIMIC-IV in a local Postgres database☆46Updated 4 years ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆72Updated 7 months ago
- A python package for removing duplicate text in clinical notes or other documents☆39Updated 5 years ago
- Sample code that demonstrates the use of the NCBO REST services☆44Updated 2 years ago
- Real time mortality prediction in the MIMIC-III database☆54Updated 7 years ago
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆71Updated 9 months ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆98Updated 3 months ago
- An R package for performing various cohort diagnostics.☆48Updated last week
- ☆41Updated last year
- ☆66Updated 4 years ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆75Updated last week
- Code for doing machine learning with various EHRs☆22Updated 2 years ago
- ☆12Updated 2 months ago
- Deprecated. For the latest MIMIC-IV code, please refer to: https://github.com/MIT-LCP/mimic-code☆293Updated 4 years ago
- Open source clinical text de-identification☆147Updated last year
- Targeted-BEHRT: Deep Learning for Observational Causal Inference on Longitudinal Electronic Health Records☆19Updated 2 years ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆88Updated 3 years ago
- Clinical Natural Language Processing using spaCy, scispacy, and medspacy☆101Updated last year
- Corresponding code for experiments described in "Predicting Clinical Outcomes Across Changing Electronic Health Records." Presented at KD…☆11Updated 8 years ago
- Weak supervision methods for extracting real world evidence from EHRs☆34Updated 5 years ago