A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization
☆32May 22, 2024Updated last year
Alternatives and similar repositories for NLPreprocessing
Users that are interested in NLPreprocessing are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- all scripts used in gatortron project☆131Nov 3, 2023Updated 2 years ago
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…☆30Nov 18, 2017Updated 8 years ago
- A python package for removing duplicate text in clinical notes or other documents☆39Aug 6, 2020Updated 5 years ago
- Python implementation of POPDx - Predictions for unseen, rare, and common labels.☆11Jun 26, 2024Updated last year
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆35Jan 2, 2024Updated 2 years ago
- This repository contains the complete source code of the MedTAG annotation tool. MedTAG is a biomedical annotation tool for tagging biome…☆12Jan 1, 2023Updated 3 years ago
- Cookbook of sql scripts for MIMIC-II☆17Dec 28, 2015Updated 10 years ago
- ☆44Jul 13, 2023Updated 2 years ago
- A project for developing transformer-based models for clinical relation extraction☆131Aug 15, 2023Updated 2 years ago
- Pilot model and converter for integration of radiology data into OMOP-CDM☆23Nov 1, 2019Updated 6 years ago
- Patient Code & Text Representation Learning☆19May 22, 2023Updated 2 years ago
- A tutorial for the ROBOT command line tool.☆17Sep 24, 2022Updated 3 years ago
- The repository for the paper "Predicting in-hospital mortality by combining clinical notes with time-series data"☆12May 23, 2021Updated 4 years ago
- Embedding Complexity In the Data Representation Instead of In the Model (arXiv:1802.04233)☆24Feb 14, 2018Updated 8 years ago
- A Python toolkit for biomedical data integration and harmonization☆19Mar 9, 2026Updated 2 weeks ago
- ☆63Jul 4, 2023Updated 2 years ago
- ☆26Mar 28, 2025Updated 11 months ago
- ☆11Jul 31, 2020Updated 5 years ago
- Using PubMed to find out how a gene contributes to addiction.☆20Dec 27, 2022Updated 3 years ago
- Implementation and experiments for Partially Supervised NER via Expected Entity Ratio in TACL 2022☆14Nov 7, 2022Updated 3 years ago
- The official SNOMED CT OWL Toolkit. OWL conversion, classification and authoring support.☆106Updated this week
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆96Oct 3, 2023Updated 2 years ago
- To explain clinical BERT model predictions, we present an approach which leverages integrated gradients to attribute events in medical re…☆11Jul 30, 2025Updated 7 months ago
- ☆101Feb 25, 2022Updated 4 years ago
- ☆38Mar 27, 2022Updated 3 years ago
- This repository demonstrates how to fine-tune the Google Gemma 2 2B model to improve its performance on Japanese instruction-following ta…☆12Aug 11, 2024Updated last year
- Source code for a comprehensive analysis of MTL over EHR timeseries data.☆37Apr 11, 2023Updated 2 years ago
- Demo of deploying FHIR workflow and service in Azure☆20Nov 16, 2018Updated 7 years ago
- Text annotation tool for team collaboration☆43Jan 10, 2024Updated 2 years ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Jan 13, 2023Updated 3 years ago
- A sample of implementing FHIR Works on AWS Integration Transform☆22Nov 2, 2020Updated 5 years ago
- Easy, yet powerful, command line configuration based on zsh, tmux and vim.☆17Jul 3, 2022Updated 3 years ago
- ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)☆76Mar 12, 2023Updated 3 years ago
- User-friendly extensions to the Disease Ontology☆20Sep 9, 2016Updated 9 years ago
- obesity challenge☆13May 12, 2018Updated 7 years ago
- ✖️MEN - A Modular Toolkit for Cross-Lingual Medical Entity Normalization☆31Dec 28, 2024Updated last year
- python code for BRLTM model☆14Jan 17, 2021Updated 5 years ago
- Pytorch implementation of Med2Vec.☆11Apr 26, 2024Updated last year
- ☆32Jul 2, 2018Updated 7 years ago