blpercha / umls-to-graph
Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.
☆41Updated 4 years ago
Alternatives and similar repositories for umls-to-graph:
Users that are interested in umls-to-graph are comparing it to the libraries listed below
- UMLS Graph database for semantic queries☆20Updated 2 years ago
- These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This…☆86Updated 8 months ago
- A near real-time named-entity recognizer☆59Updated 11 months ago
- Sample code that demonstrates the use of the NCBO REST services☆44Updated last year
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆43Updated last year
- ☆53Updated 5 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆80Updated this week
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆40Updated last year
- Source code used to develop the OHDSI knowledge base of sources with information relevant for assessing assocations between drugs and hea…☆55Updated 6 years ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- Public release of the DeepPhe analytic software☆30Updated 2 years ago
- A Serverless Text Annotation Tool for Corpus Development☆55Updated 2 months ago
- ☆67Updated 2 years ago
- Medical Relations and Entities Extraction☆36Updated 2 years ago
- An information extraction system for free-text eligibility criteria☆37Updated 6 years ago
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆67Updated 2 weeks ago
- ☆98Updated 3 years ago
- Weakly supervised medical named entity classification☆73Updated 2 years ago
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆31Updated 11 months ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆32Updated last year
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆45Updated 4 years ago
- ☆28Updated 4 years ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆65Updated 9 months ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆50Updated 3 years ago
- Data and code from our "Inferring Which Medical Treatments Work from Reports of Clinical Trials", NAACL 2019. This work concerns inferrin…☆62Updated 3 years ago
- Classes for ClinicalTrials.gov related projects☆47Updated 5 years ago
- The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…☆41Updated 11 months ago
- A convolutional neural network model for relation extraction.☆13Updated 2 years ago
- Transformers for Clinical NLP☆24Updated this week
- The official SNOMED CT OWL Toolkit. OWL conversion, classification and authoring support.☆101Updated 3 months ago