blpercha / umls-to-graphLinks
Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.
☆41Updated 5 years ago
Alternatives and similar repositories for umls-to-graph
Users that are interested in umls-to-graph are comparing it to the libraries listed below
Sorting:
- A near real-time named-entity recognizer☆61Updated 2 months ago
- These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This…☆85Updated last year
- ☆69Updated 3 years ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆40Updated last year
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆44Updated last year
- Load all concepts and relationships from UMLS into a Neo4j database☆12Updated 4 years ago
- The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…☆42Updated last year
- ☆55Updated 5 years ago
- A convolutional neural network model for relation extraction.☆12Updated 2 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆85Updated last week
- UMLS Graph database for semantic queries☆23Updated 2 years ago
- Sample code that demonstrates the use of the NCBO REST services☆43Updated last year
- Source code used to develop the OHDSI knowledge base of sources with information relevant for assessing assocations between drugs and hea…☆55Updated 7 years ago
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆69Updated 4 months ago
- A repository of code samples in various languages that show how to use the UMLS Terminology Services REST API☆172Updated 3 years ago
- A Serverless Text Annotation Tool for Corpus Development☆57Updated 6 months ago
- New approach to use Snomed-CT Concept using Word Embedding with Word2vec☆20Updated 6 years ago
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆32Updated last year
- The official SNOMED CT OWL Toolkit. OWL conversion, classification and authoring support.☆103Updated last month
- ☆152Updated last year
- Classes for ClinicalTrials.gov related projects☆47Updated 6 years ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆49Updated 3 years ago
- ☆99Updated 3 years ago
- Ontology Tutorial☆73Updated 2 years ago
- NLP2FHIR: A FHIR-based Clinical Data Normalization Pipeline and Its Applications☆61Updated 3 years ago
- Weakly supervised medical named entity classification☆73Updated 2 years ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆70Updated 3 weeks ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆333Updated 3 years ago
- Medical Relations and Entities Extraction☆37Updated 3 years ago