Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.
☆40Aug 28, 2020Updated 5 years ago
Alternatives and similar repositories for umls-to-graph
Users that are interested in umls-to-graph are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- UMLS Graph database for semantic queries☆27Jan 11, 2023Updated 3 years ago
- Load all concepts and relationships from UMLS into a Neo4j database☆13Jan 29, 2021Updated 5 years ago
- Python wrapper for UMLS REST API☆10Dec 17, 2018Updated 7 years ago
- Pytorch implementation of Med2Vec.☆11Apr 26, 2024Updated 2 years ago
- A near real-time named-entity recognizer☆66Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆88Jan 13, 2023Updated 3 years ago
- Universal Dependencies (v1.0) for the GENIA 1.0 Treebank, along with additional raw abstracts and metadata.☆23May 11, 2020Updated 6 years ago
- Build a knowledge graph from UMLS Knowledge Sources (2022) with load, visualize and query with Neo4j and Scispacy☆27Sep 7, 2022Updated 3 years ago
- Customizable translation of OBO graphs to dot for visualization using graphviz and other tools☆26Feb 21, 2025Updated last year
- VOWL Plugin for Protégé☆29Feb 8, 2026Updated 3 months ago
- Java, Perl, Python, Javascript, Ruby, etc. examples to query alphasparql.bioontology.org☆34Apr 1, 2016Updated 10 years ago
- Natural language generation for discrete data in EHRs☆22Aug 1, 2019Updated 6 years ago
- Library that supports the Mapping Master DSL for mapping spreadsheets to OWL ontologies☆63Feb 19, 2025Updated last year
- Python library for hierarchy of ICD9 Codes☆105Dec 3, 2018Updated 7 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- System for Medical Concept Extraction and Linking☆442Aug 12, 2024Updated last year
- Natural Language to SQL Queries in the OMOP CDM Datasets☆11Jun 12, 2023Updated 2 years ago
- A tutorial for the ROBOT command line tool.☆17Sep 24, 2022Updated 3 years ago
- Developer project for getting basic API integrations working in under 5 minutes☆11Updated this week
- Representation of Clinical Practice Guideline Recommendations in FHIR☆18May 13, 2026Updated last week
- ☆15Aug 24, 2022Updated 3 years ago
- ☆11Feb 2, 2026Updated 3 months ago
- UMLS to SNOMED CT and ICD-10-CM mapping tool: A Python script for generating JSON files containing mappings between UMLS CUIs and SNOMED …☆15Feb 11, 2026Updated 3 months ago
- FHIR Ontop OMOP Implementation☆21May 8, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆72May 31, 2022Updated 3 years ago
- Deal with it.☆11Oct 13, 2015Updated 10 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆344Nov 9, 2021Updated 4 years ago
- Health NLP Examples☆89Nov 8, 2018Updated 7 years ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆41Apr 2, 2024Updated 2 years ago
- A python implementation of the sinaplot using matplotlib and seaborn☆11Jun 5, 2018Updated 7 years ago
- A repository of code samples in various languages that show how to use the UMLS Terminology Services REST API☆173Aug 17, 2022Updated 3 years ago
- A Rails application for biological ontologies☆23May 7, 2026Updated 2 weeks ago
- Java library for working with the QUDT ontology and data using it.☆16Mar 8, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆101Feb 25, 2022Updated 4 years ago
- Source code of ME2Vec.☆14Jun 26, 2023Updated 2 years ago
- Transform the OMOP model to graph model☆27Dec 13, 2024Updated last year
- An ontology matcher for matching entities between knowledgebases☆72Nov 28, 2022Updated 3 years ago
- Sample code that demonstrates the use of the NCBO REST services☆44Jan 17, 2024Updated 2 years ago
- ☆14Jan 6, 2017Updated 9 years ago
- PyPI Package: An easy-to-use medication/drug code mapping tool☆21Aug 17, 2023Updated 2 years ago