Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.
☆40Aug 28, 2020Updated 5 years ago
Alternatives and similar repositories for umls-to-graph
Users that are interested in umls-to-graph are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- UMLS Graph database for semantic queries☆26Jan 11, 2023Updated 3 years ago
- Load all concepts and relationships from UMLS into a Neo4j database☆13Jan 29, 2021Updated 5 years ago
- A near real-time named-entity recognizer☆64Feb 18, 2026Updated last month
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Jan 13, 2023Updated 3 years ago
- Universal Dependencies (v1.0) for the GENIA 1.0 Treebank, along with additional raw abstracts and metadata.☆22May 11, 2020Updated 5 years ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- Build a knowledge graph from UMLS Knowledge Sources (2022) with load, visualize and query with Neo4j and Scispacy☆25Sep 7, 2022Updated 3 years ago
- An R package implementing Large-Scale Evidence Generation and Evaluation in a Network of Databases (LEGEND).☆10Dec 18, 2020Updated 5 years ago
- Customizable translation of OBO graphs to dot for visualization using graphviz and other tools☆26Feb 21, 2025Updated last year
- Natural language generation for discrete data in EHRs☆22Aug 1, 2019Updated 6 years ago
- Python library for hierarchy of ICD9 Codes☆105Dec 3, 2018Updated 7 years ago
- pytorch-retain☆13Nov 20, 2017Updated 8 years ago
- System for Medical Concept Extraction and Linking☆436Aug 12, 2024Updated last year
- Natural Language to SQL Queries in the OMOP CDM Datasets☆11Jun 12, 2023Updated 2 years ago
- A tutorial for the ROBOT command line tool.☆17Sep 24, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Developer project for getting basic API integrations working in under 5 minutes☆11Jan 30, 2026Updated last month
- Representation of Clinical Practice Guideline Recommendations in FHIR☆18May 10, 2025Updated 10 months ago
- ☆11Feb 2, 2026Updated last month
- UMLS to SNOMED CT and ICD-10-CM mapping tool: A Python script for generating JSON files containing mappings between UMLS CUIs and SNOMED …☆15Feb 11, 2026Updated last month
- Python module to parse UMLS source files☆20Feb 27, 2023Updated 3 years ago
- FHIR Ontop OMOP Implementation☆20May 8, 2024Updated last year
- ☆70May 31, 2022Updated 3 years ago
- Collation of Intro R material, R for STEPH, R for SME, and R for ASME - 2022☆12May 4, 2022Updated 3 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆344Nov 9, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Health NLP Examples☆89Nov 8, 2018Updated 7 years ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆41Apr 2, 2024Updated last year
- A repository of code samples in various languages that show how to use the UMLS Terminology Services REST API☆173Aug 17, 2022Updated 3 years ago
- A Rails application for biological ontologies☆23Mar 5, 2026Updated 2 weeks ago
- ☆101Feb 25, 2022Updated 4 years ago
- Transform the OMOP model to graph model☆27Dec 13, 2024Updated last year
- An ontology matcher for matching entities between knowledgebases☆72Nov 28, 2022Updated 3 years ago
- Sample code that demonstrates the use of the NCBO REST services☆44Jan 17, 2024Updated 2 years ago
- ☆14Jan 6, 2017Updated 9 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- PyPI Package: An easy-to-use medication/drug code mapping tool☆21Aug 17, 2023Updated 2 years ago
- Code for the CIKM 2013 paper "Discovering Coherent Topics Using General Knowledge"☆11Jul 14, 2014Updated 11 years ago
- Hypermedia API for NCBO's ontology-related projects☆27Updated this week
- [under development] Tools for ETL into OMOP CDM and deployment of OHDSI toolstack☆39Nov 10, 2023Updated 2 years ago
- Build and test OpenMRS form schemas interactively☆10Oct 29, 2025Updated 4 months ago
- FHIR Medication server that makes it easy to make medicines terminology content available as a local service.☆22Feb 12, 2021Updated 5 years ago
- Revision Management for the Semantic Web☆21Nov 17, 2020Updated 5 years ago