NUPulmonary / 2020_Grant
Code base for the Grant, Morales-Nebreda, and Markov et al., “Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia” Nature (2021) paper
☆8Updated last year
Alternatives and similar repositories for 2020_Grant:
Users that are interested in 2020_Grant are comparing it to the libraries listed below
- ☆30Updated last year
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated this week
- ☆60Updated 5 years ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆40Updated 3 years ago
- Code repository for single cell RNA-seq☆34Updated 4 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆27Updated 2 years ago
- simpler single cell RNAseq data clustering☆40Updated last month
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆44Updated last year
- Functions for single cell data analysis☆31Updated 3 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated last week
- Aligning gene expression trajectories of single-cell reference and query systems☆63Updated 6 months ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- ☆42Updated 3 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆33Updated last year
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- ☆40Updated 4 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆75Updated last year
- ☆60Updated 4 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Single-cell transcriptome profiling of an adult human cell atlas of 15 major organs☆39Updated last year
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- R-code used for single-cell RNA-Seq analysis of kidney data.☆17Updated 5 years ago
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆22Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 6 months ago
- scRNA-seq cell type identification☆44Updated 5 years ago
- A pipeline for scRNA-seq data analysis☆13Updated last month
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆45Updated 3 months ago
- R package for semi-supervised single-cell data integration☆81Updated last month
- identifying disease critical cell types and programs from single cell RNAseq☆54Updated 2 years ago
- Method for de novo mutation calling from droplet based single cell RNA seq data☆14Updated 3 years ago