Alternatives and similar repositories for LIVECell:

Users that are interested in LIVECell are comparing it to the libraries listed below

• Lee-Gihun / MEDIAR
  (NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality …
  ☆151Updated 11 months ago
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆136Updated this week
• juglab / EmbedSeg
  Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images
  ☆112Updated last year
• FZJ-INM1-BDA / celldetection
  Scalable Instance Segmentation using PyTorch & PyTorch Lightning.
  ☆130Updated 2 months ago
• vanvalenlab / intro-to-deepcell
  An introduction to deepcell and deep learning
  ☆144Updated 4 months ago
• EIDOSLAB / torchstain
  Stain normalization tools for histological analysis and computational pathology
  ☆130Updated last month
• kevinjohncutler / omnipose
  Omnipose: a high-precision solution for morphology-independent cell segmentation
  ☆107Updated this week
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆78Updated last year
• instanseg / instanseg
  ☆144Updated this week
• TIO-IKIM / CellViT
  CellViT: Vision Transformers for Precise Cell Segmentation and Classification
  ☆272Updated last month
• constantinpape / torch-em
  Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
  ☆85Updated this week
• vanvalenlab / cellSAM
  Codebase for "A Foundation Model for Cell Segmentation"
  ☆71Updated last week
• aetherAI / whole-slide-cnn
  This repository provides scripts to reproduce the results in the paper "An annotation-free whole-slide training approach to pathological …
  ☆62Updated 3 years ago
• navidstuv / NuClick
  Interactive Segmentation of Nucleus
  ☆61Updated 2 years ago
• vanvalenlab / deepcell-tf
  Deep Learning Library for Single Cell Analysis
  ☆441Updated 6 months ago
• computational-cell-analytics / micro-sam
  Segment Anything for Microscopy
  ☆458Updated this week
• marshuang80 / cell-segmentation
  PyTorch implementation of several neural network models for cellular image segmentation
  ☆47Updated 5 years ago
• Bayer-Group / paquo
  PAthological QUpath Obsession - QuPath and Python conversations
  ☆113Updated 2 months ago
• SchmollerLab / Cell_ACDC
  A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
  ☆146Updated this week
• volume-em / cem-dataset
  Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.
  ☆27Updated 2 years ago
• okunator / cellseg_models.pytorch
  Encoder-Decoder Cell and Nuclei segmentation models
  ☆89Updated 2 weeks ago
• manuel-munoz-aguirre / PyHIST
  A pipeline to segment tissue from the background in histological images
  ☆68Updated last year
• BiomedSciAI / histocartography
  A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…
  ☆249Updated last year
• clEsperanto / pyclesperanto_prototype
  GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data
  ☆218Updated last week
• perlfloccri / NuclearSegmentationPipeline
  ☆18Updated 2 years ago
• ASHISRAVINDRAN / stardist_pytorch
  StarDist PyTorch
  ☆44Updated 2 years ago
• ksugar / qupath-extension-sam
  QuPath extension for Segment Anything Model (SAM)
  ☆99Updated last month
• kreshuklab / plant-seg
  A tool for cell instance aware segmentation in densely packed 3D volumetric images
  ☆108Updated last month
• simongraham / hovernet_inference
  HoVer-Net inference code for simultaneous nuclear segmentation and classification
  ☆66Updated 2 years ago
• crosszamirski / Label-free-prediction-of-Cell-Painting-from-brightfield-images
  Label Free Prediction of Cell Painting from Brightfield Images
  ☆26Updated 2 years ago