Alternatives and similar repositories for LIVECell

Users that are interested in LIVECell are comparing it to the libraries listed below

• juglab / EmbedSeg
  Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images
  ☆121Updated last year
• Lee-Gihun / MEDIAR
  (NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality …
  ☆153Updated last year
• FZJ-INM1-BDA / celldetection
  Scalable Instance Segmentation using PyTorch & PyTorch Lightning.
  ☆145Updated 6 months ago
• vanvalenlab / cellSAM
  Codebase for "A Foundation Model for Cell Segmentation"
  ☆110Updated 2 weeks ago
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆82Updated last year
• vanvalenlab / deepcell-tf
  Deep Learning Library for Single Cell Analysis
  ☆467Updated last year
• computational-cell-analytics / micro-sam
  Segment Anything for Microscopy
  ☆605Updated last month
• kevinjohncutler / omnipose
  Omnipose: a high-precision solution for morphology-independent cell segmentation
  ☆122Updated last week
• AntonotnaWang / 3DCellSeg
  Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…
  ☆22Updated 2 years ago
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆185Updated this week
• marshuang80 / cell-segmentation
  PyTorch implementation of several neural network models for cellular image segmentation
  ☆48Updated 6 years ago
• AllenCell / aics-ml-segmentation
  ☆32Updated 2 months ago
• vanvalenlab / intro-to-deepcell
  An introduction to deepcell and deep learning
  ☆154Updated last year
• sebastianffx / stainlib
  Python 3 library for the augmentation & normalization of H&E images
  ☆61Updated 3 years ago
• matjesg / deepflash2
  A deep-learning pipeline for segmentation of ambiguous microscopic images.
  ☆63Updated 5 months ago
• EIDOSLAB / torchstain
  Stain normalization tools for histological analysis and computational pathology
  ☆156Updated 9 months ago
• navidstuv / NuClick
  Interactive Segmentation of Nucleus
  ☆66Updated 2 years ago
• yanglf1121 / NuSeT
  NuSeT: A Deep Learning Tool for Reliably Separating and Analyzing Crowded Cells
  ☆20Updated 5 years ago
• AllenCellModeling / pytorch_fnet
  Three dimensional cross-modal image inference
  ☆160Updated 2 weeks ago
• SchmollerLab / Cell_ACDC
  A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
  ☆182Updated this week
• volume-em / cem-dataset
  Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.
  ☆29Updated 2 years ago
• constantinpape / torch-em
  Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
  ☆109Updated last week
• Bayer-Group / paquo
  PAthological QUpath Obsession - QuPath and Python conversations
  ☆122Updated 2 months ago
• funalab / QCANet
  Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development
  ☆32Updated 2 years ago
• crosszamirski / Label-free-prediction-of-Cell-Painting-from-brightfield-images
  Label Free Prediction of Cell Painting from Brightfield Images
  ☆32Updated 3 years ago
• okunator / cellseg_models.pytorch
  Encoder-Decoder Cell and Nuclei segmentation models
  ☆95Updated last week
• mahmoodlab / SISH
  Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering
  ☆108Updated 2 years ago
• ksugar / qupath-extension-sam
  QuPath extension for Segment Anything Model (SAM)
  ☆122Updated 3 months ago
• instanseg / instanseg
  ☆188Updated last week
• zudi-lin / pytorch_connectomics
  PyTorch Connectomics: segmentation toolbox for EM connectomics
  ☆179Updated last week