Alternatives and similar repositories for cellSAM

Users that are interested in cellSAM are comparing it to the libraries listed below

• computational-cell-analytics / patho-sam
  Segment Anything for Histopathology
  ☆27Updated last week
• instanseg / instanseg
  ☆162Updated 3 weeks ago
• ksugar / qupath-extension-sam
  QuPath extension for Segment Anything Model (SAM)
  ☆107Updated 2 months ago
• MathOnco / valis
  Virtual Alignment of pathoLogy Image Series
  ☆156Updated 5 months ago
• hthierno / pytorch-stardist
  PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes
  ☆24Updated 2 years ago
• mahmoodlab / TriPath
  Analysis of 3D pathology samples using weakly supervised AI - Cell
  ☆99Updated 3 months ago
• marrlab / DinoBloom
  Blood Cell Foundation Model based on DINOv2
  ☆44Updated 10 months ago
• constantinpape / torch-em
  Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
  ☆94Updated this week
• okunator / cellseg_models.pytorch
  Encoder-Decoder Cell and Nuclei segmentation models
  ☆91Updated this week
• AllenCell / aics-ml-segmentation
  ☆31Updated 2 years ago
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆79Updated last year
• NHPatterson / wsireg
  multimodal whole slide image registration in a graph structure
  ☆85Updated 10 months ago
• SBU-BMI / wsinfer
  🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
  ☆69Updated 10 months ago
• AntonotnaWang / 3DCellSeg
  Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…
  ☆22Updated 2 years ago
• choosehappy / PatchSorter
  A tool for rapidly labeling objects using deep learning feature embedding
  ☆32Updated 8 months ago
• choosehappy / HoverFast
  Blazing fast nuclei segmentation for brightfield Whole Slide Images
  ☆35Updated 3 months ago
• jiyuuchc / lacss
  A deep learning model for single cell segmentation from microsopy images.
  ☆35Updated this week
• PathologyDataScience / NuCLS
  NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation
  ☆54Updated 3 years ago
• BiomedicalMachineLearning / HEMnet
  A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues
  ☆31Updated 3 months ago
• stegmaierj / Cellpose3D
  3D Extension of the Cellpose Algorithm by Stringer et al., 2021.
  ☆36Updated 2 years ago
• funkelab / cellulus
  Unsupervised Instance Segmentation in Microscopy
  ☆23Updated last year
• Lee-Gihun / MEDIAR
  (NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality …
  ☆151Updated last year
• AllenCell / aics-segmentation
  Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow
  ☆27Updated 9 months ago
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆78Updated 3 weeks ago
• weigertlab / trackastra
  ☆70Updated last week
• andreped / NoCodeSeg
  🔬 Code-free deep segmentation for computational pathology
  ☆53Updated 10 months ago
• joonkeekim / mediar-napari
  ☆20Updated last year
• GuillaumeMougeot / biom3d
  Easy Volumetric Segmentation with Deep Learning
  ☆26Updated this week
• TIO-IKIM / CellViT
  CellViT: Vision Transformers for Precise Cell Segmentation and Classification
  ☆289Updated last month
• nadeemlab / ImPartial
  Interactive deep learning whole-cell segmentation and thresholding using partial annotations
  ☆39Updated 3 weeks ago