vanvalenlab / cellSAM
Codebase for "A Foundation Model for Cell Segmentation"
☆74Updated this week
Alternatives and similar repositories for cellSAM:
Users that are interested in cellSAM are comparing it to the libraries listed below
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆68Updated 8 months ago
- ☆152Updated last week
- Encoder-Decoder Cell and Nuclei segmentation models☆89Updated last month
- QuPath extension for Segment Anything Model (SAM)☆103Updated 3 weeks ago
- Segment Anything for Histopathology☆21Updated this week
- 🔬 Code-free deep segmentation for computational pathology☆53Updated 9 months ago
- PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes☆23Updated 2 years ago
- Analysis of 3D pathology samples using weakly supervised AI - Cell☆97Updated 2 months ago
- Cloud-based data annotation tools for biological images☆79Updated last year
- Virtual Alignment of pathoLogy Image Series☆150Updated 3 months ago
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆89Updated this week
- Image-translation-assisted segmentation in 3D☆26Updated 3 years ago
- Pipeline for computational pathology☆34Updated last year
- multimodal whole slide image registration in a graph structure☆82Updated 8 months ago
- Piecewise alignment for layers of mosaics☆23Updated 3 months ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆33Updated 2 years ago
- Blazing fast nuclei segmentation for brightfield Whole Slide Images☆35Updated last month
- Unsupervised Instance Segmentation in Microscopy☆23Updated 11 months ago
- A deep learning model for single cell segmentation from microsopy images.☆35Updated this week
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆68Updated last year
- Solid Tumor Associative Modeling in Pathology☆68Updated this week
- Interactive deep learning whole-cell segmentation and thresholding using partial annotations☆36Updated this week
- ☆40Updated 3 years ago
- PAthological QUpath Obsession - QuPath and Python conversations☆113Updated 3 months ago
- ☆91Updated last week
- ☆20Updated last year
- ☆31Updated 2 years ago
- Python 3 library for the augmentation & normalization of H&E images☆53Updated 2 years ago
- Easy Volumetric Segmentation with Deep Learning☆25Updated this week
- ☆30Updated last week