Alternatives and similar repositories for cellSAM

Users that are interested in cellSAM are comparing it to the libraries listed below

• ksugar / qupath-extension-sam
  QuPath extension for Segment Anything Model (SAM)
  ☆122Updated 3 months ago
• computational-cell-analytics / patho-sam
  Segment Anything for Histopathology
  ☆50Updated 3 weeks ago
• instanseg / instanseg
  ☆188Updated last week
• MathOnco / valis
  Virtual Alignment of pathoLogy Image Series
  ☆185Updated 4 months ago
• okunator / cellseg_models.pytorch
  Encoder-Decoder Cell and Nuclei segmentation models
  ☆95Updated last week
• SBU-BMI / wsinfer
  🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
  ☆82Updated last year
• TIO-IKIM / CellViT-plus-plus
  ☆154Updated 3 months ago
• Bayer-Group / paquo
  PAthological QUpath Obsession - QuPath and Python conversations
  ☆122Updated 2 months ago
• mahmoodlab / TriPath
  Analysis of 3D pathology samples using weakly supervised AI - Cell
  ☆107Updated 9 months ago
• nadeemlab / DeepLIIF
  Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, …
  ☆215Updated 2 months ago
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆82Updated last year
• cpath-ukk / grandqc
  GrandQC tool for tissue detection and quality control in pathology
  ☆70Updated 7 months ago
• impromptuRong / hd_wsi
  ☆36Updated 7 months ago
• choosehappy / HoverFast
  Blazing fast nuclei segmentation for brightfield Whole Slide Images
  ☆36Updated 8 months ago
• constantinpape / torch-em
  Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
  ☆109Updated last week
• funkelab / cellulus
  Unsupervised Instance Segmentation in Microscopy
  ☆24Updated last year
• TIO-IKIM / CellViT
  CellViT: Vision Transformers for Precise Cell Segmentation and Classification
  ☆331Updated 3 months ago
• WeisiX / ITAS3D
  Image-translation-assisted segmentation in 3D
  ☆26Updated 3 years ago
• peng-lab / HistoBistro
  Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)
  ☆83Updated last year
• MaryamHaghighat / PathProfiler
  Pipeline for computational pathology
  ☆38Updated last year
• hthierno / pytorch-stardist
  PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes
  ☆25Updated 2 years ago
• AntonotnaWang / 3DCellSeg
  Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…
  ☆22Updated 2 years ago
• digitalpathologybern / hover_next_train
  Training/Evaluation code for HoVer-NeXt
  ☆13Updated 9 months ago
• andreped / NoCodeSeg
  🔬 Code-free deep segmentation for computational pathology
  ☆56Updated last year
• choosehappy / PatchSorter
  A tool for rapidly labeling objects using deep learning feature embedding
  ☆33Updated 2 months ago
• PathologyDataScience / NuCLS
  NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation
  ☆55Updated 3 years ago
• EIDOSLAB / torchstain
  Stain normalization tools for histological analysis and computational pathology
  ☆156Updated 9 months ago
• qupath / qupath-extension-wsinfer
  QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/
  ☆26Updated 3 months ago
• Lee-Gihun / MEDIAR
  (NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality …
  ☆153Updated last year
• Nellaker-group / happy
  ☆23Updated last month