vanvalenlab / cellSAMLinks
Codebase for "A Foundation Model for Cell Segmentation"
☆103Updated this week
Alternatives and similar repositories for cellSAM
Users that are interested in cellSAM are comparing it to the libraries listed below
Sorting:
- Segment Anything for Histopathology☆40Updated 2 months ago
- QuPath extension for Segment Anything Model (SAM)☆117Updated last month
- ☆176Updated last month
- Virtual Alignment of pathoLogy Image Series☆172Updated 2 months ago
- Encoder-Decoder Cell and Nuclei segmentation models☆93Updated last week
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆78Updated last year
- ☆139Updated last month
- CellViT: Vision Transformers for Precise Cell Segmentation and Classification☆314Updated last month
- PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes☆24Updated 2 years ago
- Inference code for HoVer-NeXt☆38Updated 4 months ago
- Training/Evaluation code for HoVer-NeXt☆14Updated 7 months ago
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆100Updated this week
- ☆34Updated 5 months ago
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆22Updated 2 years ago
- Pipeline for computational pathology☆38Updated last year
- Analysis of 3D pathology samples using weakly supervised AI - Cell☆102Updated 7 months ago
- Interactive deep learning whole-cell segmentation and thresholding using partial annotations☆38Updated 2 months ago
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆81Updated last year
- Image-translation-assisted segmentation in 3D☆26Updated 3 years ago
- Cloud-based data annotation tools for biological images☆81Updated last year
- GrandQC tool for tissue detection and quality control in pathology☆61Updated 5 months ago
- Re-stained whole slide image alignment☆35Updated last year
- Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, …☆207Updated 2 weeks ago
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆54Updated 3 years ago
- Blazing fast nuclei segmentation for brightfield Whole Slide Images☆36Updated 6 months ago
- PAthological QUpath Obsession - QuPath and Python conversations☆119Updated 8 months ago
- Blood Cell Foundation Model based on DINOv2☆52Updated last year
- multimodal whole slide image registration in a graph structure☆92Updated last year
- Stain normalization tools for histological analysis and computational pathology☆151Updated 7 months ago
- Unsupervised Instance Segmentation in Microscopy☆24Updated last year